Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- nucleus 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY13722 | Canola | mitochondrion, nucleus, plastid | 80.8 | 88.4 |
| Bra025285.1-P | Field mustard | plastid | 85.74 | 88.32 |
| CDX83707 | Canola | mitochondrion, nucleus, plastid | 80.8 | 87.7 |
| CDY66660 | Canola | plastid | 71.85 | 86.95 |
| Bra033017.1-P | Field mustard | plastid | 76.05 | 86.31 |
| PGSC0003DMT400015748 | Potato | nucleus, plastid | 56.12 | 57.6 |
| Solyc07g047900.2.1 | Tomato | mitochondrion, nucleus | 57.77 | 55.15 |
| CDY03983 | Canola | cytosol | 72.94 | 54.51 |
| Os05t0145300-01 | Rice | mitochondrion | 55.21 | 53.93 |
| KRH56532 | Soybean | mitochondrion | 62.71 | 52.53 |
| KRG93197 | Soybean | mitochondrion | 62.34 | 52.22 |
| GSMUA_Achr9P19780_001 | Banana | nucleus | 53.56 | 51.77 |
| HORVU1Hr1G019580.2 | Barley | plastid | 53.75 | 51.4 |
| TraesCS1A01G108800.1 | Wheat | mitochondrion | 54.84 | 49.18 |
| TraesCS1B01G108100.1 | Wheat | mitochondrion | 54.84 | 49.18 |
| TraesCS1D01G090300.1 | Wheat | mitochondrion | 54.66 | 49.1 |
| Zm00001d010884_P001 | Maize | mitochondrion | 54.66 | 46.36 |
| Zm00001d024823_P001 | Maize | mitochondrion | 54.48 | 45.57 |
| EES17695 | Sorghum | plastid | 56.12 | 44.82 |
| VIT_14s0066g00360.t01 | Wine grape | nucleus | 60.15 | 30.83 |
| AT4G13070.1 | Thale cress | mitochondrion | 17.55 | 27.99 |
| AT2G28480.1 | Thale cress | mitochondrion | 18.83 | 27.69 |
| AT3G25440.1 | Thale cress | plastid | 21.02 | 25.9 |
| AT3G18390.1 | Thale cress | plastid | 15.72 | 10.14 |
| AT3G23070.1 | Thale cress | plastid | 14.99 | 9.31 |
| AT5G16180.1 | Thale cress | endoplasmic reticulum | 11.7 | 8.89 |
| AT4G29750.1 | Thale cress | plastid | 13.16 | 8.56 |
| AT4G14510.1 | Thale cress | plastid | 14.08 | 8.49 |
| AT3G01370.1 | Thale cress | plastid | 15.54 | 8.41 |
Protein Annotations
| MapMan:35.1 | EntrezGene:822377 | UniProt:A0A1I9LTS8 | ProteinID:ANM65986.1 | ArrayExpress:AT3G27550 | EnsemblPlantsGene:AT3G27550 |
| RefSeq:AT3G27550 | TAIR:AT3G27550 | RefSeq:AT3G27550-TAIR-G | EnsemblPlants:AT3G27550.2 | Unigene:At.37034 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR001890 | InterPro:IPR035920 |
| RefSeq:NP_001327916.1 | PFAM:PF01985 | PFscan:PS51295 | PANTHER:PTHR31426 | PANTHER:PTHR31426:SF4 | InterPro:RNA-binding_CRM |
| SMART:SM01103 | SUPFAM:SSF75471 | UniParc:UPI0008495EAE | InterPro:YhbY_like_sf | SEG:seg | : |
Description
RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
Coordinates
chr3:-:10207727..10210231
Molecular Weight (calculated)
63227.5 Da
IEP (calculated)
8.657
GRAVY (calculated)
-1.139
Length
547 amino acids
Sequence
(BLAST)
(BLAST)
001: MFVSRSLSRH CWRTCKWSLF SLLQSDSCVR NLVSSSNPVT SIGNSSEGNS NSFQPLMNQV FKGWSRGMST SRGRSMRSKV ESRMRKESGK TLREIRRAKK
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD
101: LKKKLMTDEE RLIYNLKRAK KKVALLLQKL KKYDLPELPS PVHDPELFTS EQVQAFKKIG FKNKNYVPVG VRGVFGGVVQ NMHMHWKFHE TVQVCCDNFP
201: KEKIKEMASM IARLSGGVVI NIHNVKTIIM FRGRNYRQPK NLIPVNTLTK RKALFKARFE QALESQKLNI KKTEQQLRRM GVNPEDPVAM ASIHRVASTF
301: FNAIDKKEGT PYVFHGDKQS ERGTSVDNRE ESEPGDEDSD QEELDRFIAE IEEAADKEWE EEEAAEQEES GRIRYWNREE FAGRSRTPEL RSYGDASHGF
401: RRNDRDTHSQ RRPNDSDDDD DDGELDSEDD EIPKRFDRAR SSNTNTRRPR EDFKRRSPDP RPRPRAQVRS DDDVLSDLDN TMWDSEDEED APPANYISSS
501: DDDEDENRTV SASSSKQSRF RNNSSRDGIN NSKSKSGKQR DEDWDSD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.