Factsheet for GSMUA_Achr9P19780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66660	Canola	plastid	49.12	61.5
Bra033017.1-P	Field mustard	plastid	50.35	59.13
CDY13722	Canola	mitochondrion, nucleus, plastid	51.24	58.0
CDX83707	Canola	mitochondrion, nucleus, plastid	51.41	57.74
Bra025285.1-P	Field mustard	plastid	52.3	55.74
AT3G27550.2	Thale cress	mitochondrion	51.77	53.56
Os05t0145300-01	Rice	mitochondrion	52.3	52.86
PGSC0003DMT400015748	Potato	nucleus, plastid	49.65	52.72
HORVU1Hr1G019580.2	Barley	plastid	51.94	51.4
Solyc07g047900.2.1	Tomato	mitochondrion, nucleus	50.35	49.74
TraesCS1B01G108100.1	Wheat	mitochondrion	51.77	48.03
TraesCS1A01G108800.1	Wheat	mitochondrion	51.77	48.03
TraesCS1D01G090300.1	Wheat	mitochondrion	51.41	47.78
KRG93197	Soybean	mitochondrion	55.12	47.78
KRH56532	Soybean	mitochondrion	54.95	47.63
Zm00001d010884_P001	Maize	mitochondrion	52.47	46.05
Zm00001d024823_P001	Maize	mitochondrion	52.83	45.72
EES17695	Sorghum	plastid	53.89	44.53
CDY03983	Canola	cytosol	48.41	37.43
GSMUA_Achr2P05820_001	Banana	cytosol	18.55	32.11
VIT_14s0066g00360.t01	Wine grape	nucleus	53.89	28.58
GSMUA_Achr9P12700_001	Banana	mitochondrion	17.84	26.93
GSMUA_Achr3P16860_001	Banana	mitochondrion	19.96	25.28
GSMUA_Achr8P05570_001	Banana	cytosol	12.37	20.35
GSMUA_Achr3P26360_001	Banana	plastid	13.96	10.29
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	15.02	10.01
GSMUA_Achr10P...	Banana	plastid	15.19	8.61
GSMUA_Achr9P19190_001	Banana	plastid	11.13	8.03
GSMUA_Achr8P05580_001	Banana	plasma membrane	3.18	3.09

Protein Annotations

EnsemblPlants:GSMUA_Achr9P19780_001	EnsemblPlants:GSMUA_Achr9T19780_001	EnsemblPlantsGene:GSMUA_Achr9G19780_001	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	ncoils:Coil
PANTHER:PTHR31426	PANTHER:PTHR31426:SF4	PFAM:PF01985	PFscan:PS51295	SEG:seg	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000296A675	UniProt:M0U1T7	MapMan:35.1	:	:

Description

CRS1/YhbY domain containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G19780_001]

Coordinates

chr9:+:22355897..22359787

Molecular Weight (calculated)

65920.0 Da

IEP (calculated)

6.696

GRAVY (calculated)

-1.116

Length

566 amino acids

Sequence
(BLAST)

001: MIGEYICRSR WRHQYCRRHR DEISGKADSR NYLFGDIYLK TWSNNEFRLM SMRKLNSTSI SQFISTCACR FMSTTKGRSM RSKVEKRMRR ETGKTLREIR
101: RAKKIRKKLM TEEERIIYNL RRAKKKVALL LQKLKKYELP ELPTPRHDPE VLTPEQLQAY KKIGFRNRNY VPVGVRGVFG GVVQNMHLHW KFHETVQVCC
201: DNFPKEKIKE MATMLARLSG GIVVNIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK ARFEQALESQ KLNIKKIEQQ LRRKGVNPED PISMASIQRV
301: AATFFRAIDE KQGTPYVFRG NRPSPSEIDD PQDEPADVPS EDSDQEELDR FIQEIEDAAD KEWAEEEAAE KEESSRIRYW SQDGMGMPSR ASDWSSRSSE
401: ENRGHGRGSS GASGGLRTTE TRKWNSDPEI SGDSEGDEWE YDDEVDDAVA DIQSDENSED ETLERLPNRR QRNNRVGQEE AFRTRGNERN KWIENEDTRP
501: PNDMHEDSED GIWESEDEDT HDLLETKGTA YDYLSSSNED SDSNSGNGRR MGELKKKEID ESWDSD

Best Arabidopsis Sequence Match ( AT3G27550.1 )
(BLAST)

001: MNQVFKGWSR GMSTSRGRSM RSKVESRMRK ESGKTLREIR RAKKLKKKLM TDEERLIYNL KRAKKKVALL LQKLKKYDLP ELPSPVHDPE LFTSEQVQAF
101: KKIGFKNKNY VPVGVRGVFG GVVQNMHMHW KFHETVQVCC DNFPKEKIKE MASMIARLSG GVVINIHNVK TIIMFRGRNY RQPKNLIPVN TLTKRKALFK
201: ARFEQALESQ KLNIKKTEQQ LRRMGVNPED PVAMASIHRV ASTFFNAIDK KEGTPYVFHG DKQSERGTSV DNREESEPGD EDSDQEELDR FIAEIEEAAD
301: KEWEEEEAAE QEESGRIRYW NREEFAGRSR TPELRSYGDA SHGFRRNDRD THSQRRPNDS DDDDDDGELD SEDDEIPKRF DRARSSNTNT RRPREDFKRR
401: SPDPRPRPRA QVRSDDDVLS DLDNTMWDSE DEEDAPPANY ISSSDDDEDE NRTVSASSSK QSRFRNNSSR DGINNSKSKS GKQRDEDWDS D

Arabidopsis Description

RNA-binding CRS1 / YhbY (CRM) domain protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTS8]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.