Factsheet for GSMUA_Achr8P05570_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024130.1-P	Field mustard	cytosol	52.91	28.39
CDY30199	Canola	cytosol	52.62	28.24
VIT_11s0016g02100.t01	Wine grape	plastid	63.66	24.77
EER96635	Sorghum	plastid	69.19	24.74
Os09t0363100-01	Rice	plastid	67.73	24.6
Zm00001d020230_P006	Maize	plastid	68.9	24.59
TraesCS5D01G197600.1	Wheat	plastid	64.24	24.45
Solyc07g039500.2.1	Tomato	plastid	55.52	23.52
PGSC0003DMT400056675	Potato	cytosol, plastid	55.81	23.47
KRH02705	Soybean	plastid	54.07	23.43
CDY46704	Canola	plastid	52.33	22.99
TraesCS5B01G190100.1	Wheat	plastid	64.24	22.71
TraesCS5A01G194600.1	Wheat	plastid	64.24	22.71
HORVU5Hr1G057460.1	Barley	nucleus, plastid	64.83	22.23
AT4G29750.1	Thale cress	plastid	54.07	22.12
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	53.49	21.67
GSMUA_Achr2P05820_001	Banana	cytosol	18.6	19.57
GSMUA_Achr3P26360_001	Banana	plastid	40.41	18.1
GSMUA_Achr9P12700_001	Banana	mitochondrion	18.31	16.8
GSMUA_Achr3P16860_001	Banana	mitochondrion	18.31	14.09
GSMUA_Achr9P19190_001	Banana	plastid	31.98	14.01
GSMUA_Achr9P19780_001	Banana	nucleus	20.35	12.37
GSMUA_Achr10P...	Banana	plastid	33.72	11.61
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	2.03	7.07
GSMUA_Achr8P05580_001	Banana	plasma membrane	7.27	4.29

Protein Annotations

EnsemblPlants:GSMUA_Achr8P05570_001	EnsemblPlants:GSMUA_Achr8T05570_001	EnsemblPlantsGene:GSMUA_Achr8G05570_001	Gene3D:3.30.110.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf
ncoils:Coil	PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	PFAM:PF01985	PFscan:PS51295	SMART:SM01103
SUPFAM:SSF75471	UniParc:UPI000295E39F	UniProt:M0TMW0	MapMan:16.12.2.1.3	:	:

Description

Putative Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G05570_001]

Coordinates

chr8:-:3628584..3631743

Molecular Weight (calculated)

39003.0 Da

IEP (calculated)

7.943

GRAVY (calculated)

-0.417

Length

344 amino acids

Sequence
(BLAST)

001: MSFMVSSKLT GGVLVSRNKE YIVFYRGNDF VTSSVMEVLS EKQKLASIHQ DEEEIARLRA STSIVAHVKS PKGQLVAGTL AETLEAKSRW GNPFSAEERE
101: MLKKDMVLAK HASLVRYLER KLVFAKIKVR KAEKALSKVQ EFLKPADLPI DLETVSDEER ALFRNIGLKM RGALLLGRRG VFDGTVENMH LNWKHRELVK
201: ILVKGKSFAQ VKHYAISLEA ESGGVLISLD KTTKGYAIII YRGKNYQRPP TLRPKNLLTR RQALARSIEL QRREALIHHI SSLQEKIQIL TSQLEQMEDD
301: KGPGEKDLDL PVDLFSDDDV EDEGEEAYLE TYSSGAEEEE DVFR

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.