Factsheet for GSMUA_Achr8P05580_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
mitochondrion 2
endoplasmic reticulum 3
nucleus 1
extracellular 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34465	Soybean	plastid	31.9	23.11
KRG92332	Soybean	plastid	32.42	22.63
Solyc09g083350.2.1	Tomato	mitochondrion	33.62	22.2
PGSC0003DMT400002898	Potato	mitochondrion	33.62	22.2
GSMUA_Achr3P26360_001	Banana	plastid	28.99	22.01
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	31.39	21.55
CDY16286	Canola	plastid	31.73	21.49
AT3G23070.1	Thale cress	plastid	32.25	21.34
CDY10696	Canola	plastid	31.22	21.26
CDY10350	Canola	plastid	31.22	20.99
Bra036865.1-P	Field mustard	plastid	30.87	20.93
Bra033883.1-P	Field mustard	mitochondrion	31.05	20.9
CDY29740	Canola	plastid	31.05	20.61
VIT_05s0020g04770.t01	Wine grape	plastid	31.56	20.4
AT4G14510.1	Thale cress	plastid	31.73	20.4
GSMUA_Achr9P19190_001	Banana	plastid	22.98	17.07
GSMUA_Achr10P...	Banana	plastid	28.64	16.72
GSMUA_Achr8P05570_001	Banana	cytosol	4.29	7.27
CDY70711	Canola	nucleus	2.74	6.23
Bra036994.1-P	Field mustard	nucleus	7.38	5.8
GSMUA_Achr3P16860_001	Banana	mitochondrion	3.95	5.15
GSMUA_Achr9P12700_001	Banana	mitochondrion	2.74	4.27
GSMUA_Achr9P19780_001	Banana	nucleus	3.09	3.18
GSMUA_Achr2P05820_001	Banana	cytosol	1.37	2.45

Protein Annotations

Gene3D:3.30.110.60	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr8G05580_001	EnsemblPlants:GSMUA_Achr8P05580_001	EnsemblPlants:GSMUA_Achr8T05580_001
InterPro:IPR001890	InterPro:IPR035920	UniProt:M0TMW1	PFAM:PF01985	PFscan:PS51257	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF7	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	TMHMM:TMhelix
UniParc:UPI000295DC99	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G05580_001]

Coordinates

chr8:-:3631887..3636870

Molecular Weight (calculated)

65211.7 Da

IEP (calculated)

9.987

GRAVY (calculated)

-0.347

Length

583 amino acids

Sequence
(BLAST)

001: MIRIPCTRGY YPLFLAQGCL LPPLSLSLMA IAFAALSPHL SLSPFPSPSP LPSSASSSVP VLLIHRSVLS RSCLRGSSAC LSSQALRTGG EELPDEDSVE
101: FEKKDTDIHN KKKNTKKKKL RPSFCDQTLE RWSVKISSRR SSFPWQNQKI QPSQGLSAPG GSVVDKCSDS GVSDGSLERS VDEIPPNHGR SIPFRKRSIS
201: APWDHGAEHG QKHIHSGFVN ETLMKNFEFG GEDERHKWTS VDAKRRGCSD QNKTSLNFGD NSGVSQLHRS NTELAERAIP EPELRRLRDA ALRMKERMTV
301: GPAGVTEAVV KNIHEKWKEA EVVKLRFEGT PSLNMKRTHE ILENKTGGLV IWRSGRSVVL YKGMTYELPC IQTYSKLANT DSNYTSDIDN ILDQLGPRYQ
401: DWSGRNPLPV DADLLPGVIP GYAPPFRLLP YKTRSTLRDR EMTALRRLAR TMPPHFALGI NRQHQGLAAA IVKLWEKSSI VKIAIKRGIP NTSNERMAEE
501: IKNKGASLRL EIILFVILCL RFFLLLHFFF GGMANCWSSS NDDQIYKFHG ISNLFKDRIP LFCLIVNCKI TIPLSASLSL VVL

Best Arabidopsis Sequence Match ( AT4G29750.1 )
(BLAST)

001: MALCQFPLNL HTISSSTSSS PRFRRLQPLD TSTKPNFLIR RLRFHSFNHP VRFHTRELSV ITATIDIDTH QRKKTKRKPK PGFFEEISDK WSSRISPKTE
101: KLPWQKQEEQ IQHHEDEEDE EGDESSSNLS SGNGLSDKRT DSNRLYSANE PWSFPRPSGY MSAPWVNNGG SKGVNFTTSS EQGIQSSSFH DVTTVDRYRR
201: DNDSSDRAVD SDLDDGERGM IDSGNNKGIW RTRKSNTVEA ERIVPEHELK RLRNVALRMV ERVKVGSAGI TQALVEAIHE KWEVDEVVKL KFSEPYSLNM
301: KRTHEVLEKK TGGLVIWRSG SSVVLYRGIS YKLKCVQTFI KQNNLEANPE IHRSVEARDY VQEDGNYPKN VPKEQLSELC ELNDLLDEVG PRFHDWTGCA
401: PFPVDADLLP GYVEGYRCPF RILPQGVKPC LSNTEMTEMR RLARTSPPHF ALGRSRELQG LAKAMVKLWA KSAIAKIAIK RGVENTRNER MAEELKRLTR
501: GVLVSRNKEY IVFYRGNDFM PPAVAEALTE RQKEITEVLQ AKEDQAREMA STRATLTSQA KSPKTQLLAG TLAETIAASS RWAPNASSVD IEELKRESAS
601: IKRAALIRDL ELRLLYGKQK LRRAERDLAK VQKDLDPSEL PTDSEIITEE ERLLYRKIGL SMDPFLLLGR REVYDGTIEN MHLHWKHREL VKVIVRGKSL
701: PQVKHIAISL EAESGGVLVS VDKTMKGYAI ILYRGKNYQM PFRLRPSNLL TRKKAFARSI ELQRREALKY HVADLEERIE LLKTGQDDDM ETRNKSDEEE
801: ENLYLRVDES DFSSDEDESL EWESEKNETF LSSEGKEEEE A

Arabidopsis Description

CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4JNR2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.