CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10696	Canola	plastid	95.85	97.08
AT3G23070.1	Thale cress	plastid	79.93	78.66
CDY16286	Canola	plastid	63.09	63.53
CDY29740	Canola	plastid	63.32	62.53
KRG92332	Soybean	plastid	54.67	56.77
VIT_05s0020g04770.t01	Wine grape	plastid	58.71	56.43
Solyc09g083350.2.1	Tomato	mitochondrion	55.71	54.7
PGSC0003DMT400002898	Potato	mitochondrion	55.59	54.59
KRH34465	Soybean	plastid	50.29	54.16
CDY70711	Canola	nucleus	15.92	53.7
TraesCS4A01G150500.1	Wheat	plastid	44.64	52.09
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	50.87	51.94
CDX92233	Canola	cytosol	5.54	48.48
TraesCS4D01G150700.1	Wheat	plastid	47.52	48.36
Zm00001d007572_P001	Maize	plastid	46.83	48.22
TraesCS4B01G161000.1	Wheat	plastid	47.29	48.07
OQU83762	Sorghum	cytosol, nucleus, plastid	46.94	47.6
HORVU7Hr1G052190.1	Barley	plastid	47.98	46.9
Os11t0592400-00	Rice	plastid	47.52	46.5
CDX95528	Canola	cytosol	24.57	45.03
CDY30199	Canola	cytosol	33.22	44.93
CDY46704	Canola	plastid	34.72	38.44
CDY18518	Canola	plastid	33.33	35.86
CDX75965	Canola	plastid	33.79	34.88
CDY51940	Canola	plastid	33.56	34.68
GSMUA_Achr8P05580_001	Banana	plasma membrane	20.99	31.22
CDY49049	Canola	plastid	32.99	29.3
CDY37526	Canola	plastid	32.76	28.95
CDY34540	Canola	mitochondrion	9.69	25.93
CDY49592	Canola	mitochondrion	9.69	25.85
CDX95529	Canola	plastid	7.96	22.77
CDY27892	Canola	plastid	10.84	21.56
CDY31205	Canola	mitochondrion	9.23	21.51
CDY00840	Canola	plastid	10.96	21.49
CDX85512	Canola	golgi	26.76	21.17
CDX83289	Canola	mitochondrion	9.0	20.97
CDY38130	Canola	golgi	26.3	20.67
CDY66660	Canola	plastid	10.61	20.35
CDY15751	Canola	mitochondrion, plastid, vacuole	7.61	19.02
CDY13722	Canola	mitochondrion, nucleus, plastid	10.38	18.0
CDX83707	Canola	mitochondrion, nucleus, plastid	10.38	17.86
CDY03983	Canola	cytosol	10.5	12.43

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	GO:A0A078F751	UniProt:A0A078F751	EnsemblPlants:CDY10350	ProteinID:CDY10350
ProteinID:CDY10350.1	InterPro:CFM3	ncoils:Coil	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00032244001	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846
PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI0004EC3C43	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

BnaC05g29290DBnaC05g29290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F751]

Coordinates

chrLK032002:+:887329..891224

Molecular Weight (calculated)

98360.0 Da

IEP (calculated)

6.238

GRAVY (calculated)

-0.642

Length

867 amino acids

Sequence
(BLAST)

001: MAIKPSRQFC PTILTKTKLV HSFQSSFCFR FLRYNSFSIL TPTRNAIIAS GDQTQSKRFS LSLVSKVKSS SNAEWLENWN ITQKRNQPKP PKIVVNYRKE
101: GRFTSGDSVS RDGDGVTMEK IVEKLRKYGY MEGDDSKEIE QERRIEKGSV EDIFYIEEGM LPDTRGGFSD ESVLGEVGFP WEKISAEKRK ELESEWIAKK
201: ESRYSLAEMT LPESELRRLR NLTFRTASKM KIRGAGVTQV VVDAVKEKWK SSEIVRLKIE GASALNMRKM HETLERKTGG LVIWRSGTSI SLYRGVSYEL
301: PAGKWNKQKK EEKSPSSLPA TTSVVESRDE EVLLPQRDEE TTSVEKKDQE PEVEYEDEIE ELLDGLGPRF KDWTGDHPLP IDADLLPGAV PGYEPPFRIL
401: PYGVRSSLGP KEATALRRLA RFLPPHFALG RSRQLQGLAT AMVTLWEKSM LAKIAIKRGV QLTTSERMAE ELKKLTGGIL LSRNKDYLVF YRGKNFLSRE
501: VAEALVEQEK FVRSLQDEEE EARLRGSSLA LIVPSTEPSN KLVSAGTLGE TLDATGKWGK NLDDGHHAEE VKHEVEKLRH EKLVRKLEKK LAFAERKLLK
601: AERGLAKVEE CLQPAEQRAD PESITDEERF MFRKLGLKMK AFLLLGRRGV FDGTVENMHL HWKYRELVKV IVKAKTFEGV KKVALALEAE SGGILVSIDK
701: VSKGYAIIVY RGKDYKRPPM LRPKNLLTKR KALARSIELQ RREGLIKHIS AMHAGAEQLR AELEQMEKIA DNGDEELYNK LDVAYASSDE ETEETDEEVD
801: AYSETYGEGE EAAILAEGEV SEIDDEDWDS DESETRFGDD FVPYAEDLQT KSEDVHRQES SSAASKH

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.