Factsheet for TraesCS4D01G150700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G150500.1	Wheat	plastid	84.51	96.9
HORVU7Hr1G052190.1	Barley	plastid	94.48	90.76
Zm00001d007572_P001	Maize	plastid	73.71	74.58
OQU83762	Sorghum	cytosol, nucleus, plastid	72.89	72.63
Os11t0592400-00	Rice	plastid	74.41	71.56
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	52.0	52.18
KRG92332	Soybean	plastid	49.3	50.3
Solyc09g083350.2.1	Tomato	mitochondrion	50.82	49.04
PGSC0003DMT400002898	Potato	mitochondrion	50.82	49.04
VIT_05s0020g04770.t01	Wine grape	plastid	51.88	49.0
KRH34465	Soybean	plastid	45.77	48.45
CDY10696	Canola	plastid	48.24	48.01
CDY10350	Canola	plastid	48.36	47.52
Bra033883.1-P	Field mustard	mitochondrion	48.24	47.46
AT3G23070.1	Thale cress	plastid	49.06	47.45
CDY16286	Canola	plastid	46.36	45.88
Bra036865.1-P	Field mustard	plastid	45.89	45.47
CDY29740	Canola	plastid	46.6	45.22
AT4G14510.1	Thale cress	plastid	46.6	43.77
CDY70711	Canola	nucleus	12.68	42.02
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	33.22	36.33
TraesCS7D01G553500.1	Wheat	plastid	28.05	32.78
TraesCS5D01G197600.1	Wheat	plastid	33.69	31.75
TraesCS2D01G327400.1	Wheat	plastid	33.22	26.08
TraesCS7D01G222900.1	Wheat	mitochondrion	9.27	23.51
Bra036994.1-P	Field mustard	nucleus	20.31	23.35
TraesCS3D01G505800.1	Wheat	mitochondrion	9.62	20.87
TraesCS2D01G347400.2	Wheat	mitochondrion, nucleus, plastid	10.45	15.45
TraesCS1D01G090300.1	Wheat	mitochondrion	9.62	13.46

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	InterPro:CFM3	ncoils:Coil	GO:GO:0000373	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	EnsemblPlantsGene:TraesCS4D01G150700
EnsemblPlants:TraesCS4D01G150700.1	InterPro:YhbY_like_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4D:-:170223060..170232402

Molecular Weight (calculated)

95170.4 Da

IEP (calculated)

6.286

GRAVY (calculated)

-0.626

Length

852 amino acids

Sequence
(BLAST)

001: MAFSPALHLH HPPRLHHLLL SSNPLSSSSC AQYPWLSAWS CPRRGLRPPA PALDLRPEPS PTSDSDDEDA VGTSRHSGRS TMSLILRRLK RAGYSPEAQT
101: APSTVSQHPR RGSVEDVFRA DDGVLPNARG GFDDDAESSL VDARFPWERP MPPPEAAARA ARSPAWMAEL TLPEPELRRL RHAAMRIKSK TQVGGAGVTR
201: EIVAKIKEKW RTDEVVRVKV NGTPALNMRL FHEILERKTG GLVIWRSGTS VSLYRGVAYD VPETTKGTNR TWQDVGMKSS IRGPPIPSSL PNEKVNSMQD
301: SNGGLVSNTE KEETIETVPE IKYEEEIDRL LDELGPRYSD WPGSNPLPVD ADLLPATVPG YKPPFRVLPY GVRRSLSRKD TTNLRRLGRG LPPHFSLGRS
401: RQLQGLAAAM VKLWERSSIA KIALKRGVQL TTSERMAEDI KKLTGGVMLS RNNDFVVFYR GKDFLSTELA EALLERESSM KSLQDEEQAR LNAKLSFTSS
501: TEAFIESTVA GTLGETLEAN SKYGNELDGN HVDKMTRTVE AAKHADLVRE LEWKLALAEK RIAKAERVLG KVETALNPTE DTKPPETITD EERFMFRKLG
601: LRMKAFLLLG RRGVFDGTIE NMHLHWKYRE LVKILVKAKS FADVKRTALS LEVESGGILV SVDKVSKGYA IVVFRGKDYK RPSMLRPRNL LSKRKALARS
701: IELQRMEALS RHIGKLNRRV NQLRSELVQV EDAKGQGDEE LYAKLDSAYS SEDEDVEDED DEAYLRSFDN PIVRATVDEN ETAIADSESS YSNDDDSAED
801: NGDCDEDEVN GVEYSDYDDD EDCEPAVISA GDFQRNLYSG CSDGDRLPRR RG

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.