Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G150700.1 | Wheat | plastid | 96.9 | 84.51 |
| HORVU7Hr1G052190.1 | Barley | plastid | 94.89 | 79.48 |
| Zm00001d007572_P001 | Maize | plastid | 77.66 | 68.53 |
| OQU83762 | Sorghum | cytosol, nucleus, plastid | 76.58 | 66.55 |
| Os11t0592400-00 | Rice | plastid | 78.73 | 66.03 |
| GSMUA_Achr3P29330_001 | Banana | cytosol, nucleus, plastid | 55.85 | 48.88 |
| KRG92332 | Soybean | plastid | 54.1 | 48.14 |
| VIT_05s0020g04770.t01 | Wine grape | plastid | 55.99 | 46.12 |
| KRH34465 | Soybean | plastid | 49.93 | 46.09 |
| Solyc09g083350.2.1 | Tomato | mitochondrion | 54.64 | 45.98 |
| PGSC0003DMT400002898 | Potato | mitochondrion | 54.51 | 45.87 |
| CDY10696 | Canola | plastid | 52.09 | 45.21 |
| AT3G23070.1 | Thale cress | plastid | 53.57 | 45.18 |
| Bra033883.1-P | Field mustard | mitochondrion | 52.22 | 44.8 |
| CDY10350 | Canola | plastid | 52.09 | 44.64 |
| CDY16286 | Canola | plastid | 50.34 | 43.44 |
| Bra036865.1-P | Field mustard | plastid | 49.8 | 43.02 |
| CDY29740 | Canola | plastid | 50.74 | 42.94 |
| AT4G14510.1 | Thale cress | plastid | 50.61 | 41.46 |
| CDY70711 | Canola | nucleus | 14.27 | 41.25 |
| TraesCS1A01G376400.1 | Wheat | plastid | 37.15 | 38.66 |
| TraesCS7A01G557100.1 | Wheat | cytosol, plastid | 31.63 | 32.68 |
| TraesCS5A01G194600.1 | Wheat | plastid | 41.99 | 32.07 |
| TraesCS2A01G335400.1 | Wheat | plastid | 37.15 | 24.69 |
| TraesCS7A01G219200.1 | Wheat | mitochondrion | 10.23 | 22.62 |
| Bra036994.1-P | Field mustard | nucleus | 21.67 | 21.73 |
| TraesCS3A01G499000.2 | Wheat | mitochondrion, nucleus | 10.63 | 18.2 |
| TraesCS2A01G349000.1 | Wheat | mitochondrion | 11.57 | 17.84 |
| TraesCS2A01G366200.1 | Wheat | mitochondrion | 11.17 | 17.4 |
| TraesCS1A01G108800.1 | Wheat | mitochondrion | 9.83 | 11.97 |
Protein Annotations
| MapMan:16.12.2.1.3 | Gene3D:3.30.110.60 | InterPro:CFM3 | ncoils:Coil | GO:GO:0000373 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | InterPro:IPR001890 | InterPro:IPR035920 | PFAM:PF01985 | PFscan:PS51295 |
| PANTHER:PTHR31846 | PANTHER:PTHR31846:SF13 | InterPro:RNA-binding_CRM | SMART:SM01103 | SUPFAM:SSF75471 | EnsemblPlantsGene:TraesCS4A01G150500 |
| EnsemblPlants:TraesCS4A01G150500.1 | InterPro:YhbY_like_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr4A:-:296322400..296331874
Molecular Weight (calculated)
83363.3 Da
IEP (calculated)
10.468
GRAVY (calculated)
-0.530
Length
743 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFSPALHLH HPPRLHYLLL SSNPLSSSFC AQYPWFSAWS RPRRGLRPPA PALDLRPEPS PTSDSDDEDA VGTSRHSGRS TMSLILRRLK RAGYSPEAQT
101: AHSTVSQHPR RGSVEDVFRA DDGVLPNARG GFDNDAESSL VDARFPWERP MPPPEAAARA ARSPAWMAEL TLPEPELRRL RHAAMRIKSK TQVGGAGVTR
201: EIVAKIKEKW RTDEVVRVKV NGTPALNMRL FHEILERKTG GLVIWRSGTS VSLYRGVAYD VPETTKGTNR TWQDVGMKSS IKGPPTPSSL PNGKVNSMQD
301: SNGGLVSNTE KEETIETVPE IKYEEEIDRL LDELGPRYSD WPGSNPLPVD ADLLPATVPG YKPPFRVLPY GVRRSLSRKD TTNLRRLGRG LPPHFALGRS
401: RQLQGLAAAM VKLWERSSIA KIALKRGVQL ITSERMAEDI KKLTGGVMLS RNNDFVVFYR GKDFLSTELE EALLERESSM KSLQDEEQAR LNAKLSFTSS
501: TEAFIESTVA GTLEETLEAN SKYGNELDVN HVDKMTRTVE AAKHADLVRK LEWKLALAEK RIAKAKRVLG KVETALKPTE DTKPPETITD EERFMFRKLG
601: LRMKAFLLLG RRGVFDGTIE NMHLHWKYRE LVKILVKAKS FADVKRTALS LEVESGGILV SVDKVSKGYA IVVFRGKDYR RPSMLRPRNL LSKRKALARS
701: IELQRMEALS RHIGKLNRRV NQLRSELVQV EDVKDRGDRG AVC
101: AHSTVSQHPR RGSVEDVFRA DDGVLPNARG GFDNDAESSL VDARFPWERP MPPPEAAARA ARSPAWMAEL TLPEPELRRL RHAAMRIKSK TQVGGAGVTR
201: EIVAKIKEKW RTDEVVRVKV NGTPALNMRL FHEILERKTG GLVIWRSGTS VSLYRGVAYD VPETTKGTNR TWQDVGMKSS IKGPPTPSSL PNGKVNSMQD
301: SNGGLVSNTE KEETIETVPE IKYEEEIDRL LDELGPRYSD WPGSNPLPVD ADLLPATVPG YKPPFRVLPY GVRRSLSRKD TTNLRRLGRG LPPHFALGRS
401: RQLQGLAAAM VKLWERSSIA KIALKRGVQL ITSERMAEDI KKLTGGVMLS RNNDFVVFYR GKDFLSTELE EALLERESSM KSLQDEEQAR LNAKLSFTSS
501: TEAFIESTVA GTLEETLEAN SKYGNELDVN HVDKMTRTVE AAKHADLVRK LEWKLALAEK RIAKAKRVLG KVETALKPTE DTKPPETITD EERFMFRKLG
601: LRMKAFLLLG RRGVFDGTIE NMHLHWKYRE LVKILVKAKS FADVKRTALS LEVESGGILV SVDKVSKGYA IVVFRGKDYR RPSMLRPRNL LSKRKALARS
701: IELQRMEALS RHIGKLNRRV NQLRSELVQV EDVKDRGDRG AVC
001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S
Arabidopsis Description
CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.