Factsheet for Bra033883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10696	Canola	plastid	96.77	97.9
AT3G23070.1	Thale cress	plastid	79.91	78.55
Bra036865.1-P	Field mustard	plastid	62.12	62.56
KRG92332	Soybean	plastid	54.16	56.17
VIT_05s0020g04770.t01	Wine grape	plastid	57.97	55.65
Solyc09g083350.2.1	Tomato	mitochondrion	55.77	54.7
PGSC0003DMT400002898	Potato	mitochondrion	55.66	54.59
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	6.24	54.55
KRH34465	Soybean	plastid	49.77	53.54
TraesCS4A01G150500.1	Wheat	plastid	44.8	52.22
GSMUA_Achr3P29330_001	Banana	cytosol, nucleus, plastid	50.92	51.94
TraesCS4D01G150700.1	Wheat	plastid	47.46	48.24
Zm00001d007572_P001	Maize	plastid	46.77	48.1
TraesCS4B01G161000.1	Wheat	plastid	47.34	48.07
OQU83762	Sorghum	cytosol, nucleus, plastid	47.11	47.72
HORVU7Hr1G052190.1	Barley	plastid	48.04	46.9
Os11t0592400-00	Rice	plastid	47.46	46.39
Bra024130.1-P	Field mustard	cytosol	34.06	46.02
Bra022317.1-P	Field mustard	cytosol, endoplasmic reticulum	6.35	36.18
Bra037586.1-P	Field mustard	plastid	33.03	35.01
Bra001704.1-P	Field mustard	plastid	33.37	34.4
GSMUA_Achr8P05580_001	Banana	plasma membrane	20.9	31.05
Bra011945.1-P	Field mustard	mitochondrion	6.58	29.53
Bra036994.1-P	Field mustard	nucleus	24.83	29.01
Bra039123.1-P	Field mustard	plastid	33.03	28.86
Bra034894.1-P	Field mustard	mitochondrion	9.35	25.08
Bra015127.1-P	Field mustard	plastid	10.51	20.92
Bra000492.1-P	Field mustard	mitochondrion	8.55	20.9
Bra023555.1-P	Field mustard	golgi	25.98	20.45
Bra033017.1-P	Field mustard	plastid	10.05	18.05
Bra025285.1-P	Field mustard	plastid	10.16	16.57

Protein Annotations

MapMan:16.12.2.1.3	Gene3D:3.30.110.60	EnsemblPlantsGene:Bra033883	EnsemblPlants:Bra033883.1	EnsemblPlants:Bra033883.1-P	InterPro:CFM3
ncoils:Coil	GO:GO:0000373	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:IPR001890	InterPro:IPR035920
UniProt:M4EYJ1	PFAM:PF01985	PFscan:PS51295	PANTHER:PTHR31846	PANTHER:PTHR31846:SF13	InterPro:RNA-binding_CRM
SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000254733A	InterPro:YhbY_like_sf	SEG:seg	:

Description

AT3G23070 (E=2e-290) | RNA binding

Coordinates

chrA05:-:14780682..14784079

Molecular Weight (calculated)

98445.8 Da

IEP (calculated)

5.935

GRAVY (calculated)

-0.699

Length

866 amino acids

Sequence
(BLAST)

001: MKPSRQFCPT ILAKTKLVHS FQSSFCFRFL RYNGFSILTP TRNASIASSD QTQSKRFSLS PVSKVKTSNA EWLENWNRSQ KRNQPKPPKI VVNYRKEGRL
101: TSGDSVSRDG DGVTMEKIVE KLRKYGYMEG DDSKEIEQER RIEKGSVEDI FYVEEGMLPD TRGGFSEESV LGEVGFPWEK ISAEKRKELE SEWTAKKESR
201: YSLAEMTLPE PELRRLRNLT FRTASKMKIR GAGVTQVVVD AVKEKWKSAE IVRLKIEGAS ALNMRKMHET LERKTGGLVI WRSGTSISLY RGVSYELPAG
301: KWNKQKREEK TPSSLPATTS VVESRDEEVL LPQRDEETTS VEKKDQEPEV EYEDEIEELL DGLGPRFKDW TGDHPLPIDA DLLPGAVPGY EPPFRILPYG
401: VRSSLGPKEA TALRRLARFL PPHFALGRSR QLQGLATAMV TLWEKSMLAK IAIKRGVQLT TSERMAEELK KLTGGILLSR NKDYLVFYRG KNFLSREVAE
501: ALVEQEKFVR SLQDEEEEAR LRGSSSALIV PSTEPSNKLV SAGTLGETLD ATGKWGKNLD DGHHAEEVKH EVEKLRHESL VRKLEKKLAF AERKLLKAER
601: GLAKVEECLH PAEQRADLES ITDEERFMFR KLGLKMKAFL LLGRRGVFDG TVENMHLHWK YRELVKIIVK AKTFEGVKKV ALALEAESGG ILVSVDKVSK
701: GYAIIVYRGK DYKRPPMLRP KNLLTKRKAL ARSIELQRRE GLIKHISAMH ARAEQLRAEL EQMEKIADNG DEELYNKLDV AYASSDEETE ETDEEEEEDS
801: YSETYGEGEE ADILAEGEVS EIDDEDWDSD ESETRFGDDF VPYAEDLQTK SEDVQRQESS SAASKH

Best Arabidopsis Sequence Match ( AT3G23070.1 )
(BLAST)

001: MAMKPSLHFC PTTVTKKFVY SFQSSFCFRF LRYSSSISLG SCKGVTFSSR NDQIASRRFS FSRDCNNGVW LENWNRIQKR NQPKPPKVVV NYRKEGRFSG
101: SEIVSGDDNR SRDGDGSTME KIVEKLKKYG YMEEVQNKEI EQERRIEKGS VEDIFYVEEG KLPNTRGGFT EESLLGGENV IGSNGDVGFP WEKMSAKEKK
201: ELEAEWTAKK ENRYSLAEMT LPESELRRLR NLTFRTASKM RIRGGGVTQV AVDAIKEKWK SAEIVRLKIE GASALNMRKM HEILEKKTGG LVIWRSGTSI
301: SLYRGVSYEL PSGKWNKQRR EETPPEAVIE NHDETTTMVD KSDEKVHLPQ LEQETTSVEK KDQTSPVVEY EDELDELLDD LGPRFMDWPG DNPLPVDADL
401: LPGAIPDYEP PFRVLPYGVR SSLGPKEATA LRRLARSIPP HFALGRSRQL QGLATAMVRL WEKSMLAKIA IKRGVQSTTS ERMAEDLKKL TGGIMLSRNK
501: DFLVFYRGKN FLSREVADAL VEQERFVRTL QDEEEQARLR GSSALIVPST EPANKLVSAG TLGETLDATG KWGKNLDDDD HSDEVKQEVE ILRHENLVRK
601: LERKLAFAER KLLKAERGLA KVEVCLKPAE QREDPESITD EERFMFRKLG LKMKAFLLLG RRGVFDGTVE NMHLHWKYRE LVKIIVKAKT FDGVKKVALA
701: LEAESGGILV SIDKVTKGYA IIVYRGQDYK RPTMLRPKNL LTKRKALARS IELQRREGLL KHISTMQAKA KQLRAEIEQM EKVTDKGDEE LYNKLDMAYA
801: SSDEETDEED DDDAFPETYA EGEDGEEGEI LAGELSETED KDLDSNESET GFGDDSVLFA EDLHTKSEDL PNKKVRLQHQ S

Arabidopsis Description

CFM3ACRM-domain containing factor CFM3A, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:F4J2U9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.