Factsheet for Bra022317.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, endoplasmic reticulum

Predictor Summary:

plastid 2
plasma membrane 3
cytosol 2
peroxisome 1
mitochondrion 2
extracellular 1
golgi 1
endoplasmic reticulum 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plasma membrane
MultiLoc:	cytosol
Plant-mPloc:	peroxisome, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92233	Canola	cytosol	27.63	42.42
Bra011945.1-P	Field mustard	mitochondrion	23.68	18.65
KRH41639	Soybean	mitochondrion, plastid	49.34	10.32
TraesCS1A01G376400.1	Wheat	plastid	48.03	10.22
Bra034894.1-P	Field mustard	mitochondrion	21.71	10.22
Bra001704.1-P	Field mustard	plastid	55.92	10.12
Bra037586.1-P	Field mustard	plastid	53.95	10.04
VIT_17s0000g03610.t01	Wine grape	plastid	53.95	9.88
GSMUA_Achr3P26360_001	Banana	plastid	49.34	9.77
KRH39182	Soybean	plastid	50.0	9.61
HORVU1Hr1G083550.4	Barley	plasma membrane	48.03	9.42
KRH48490	Soybean	nucleus	48.68	9.36
TraesCS1D01G383500.1	Wheat	mitochondrion, plastid	47.37	9.24
Bra024130.1-P	Field mustard	cytosol	38.82	9.2
Solyc03g119450.2.1	Tomato	nucleus	49.34	9.15
KXG22496	Sorghum	plastid	48.03	9.11
PGSC0003DMT400014644	Potato	plastid	49.34	9.1
TraesCS1B01G396800.2	Wheat	plastid	46.71	8.96
Os05t0551900-00	Rice	plastid	46.05	8.95
Zm00001d038922_P001	Maize	extracellular	46.71	8.93
Bra000492.1-P	Field mustard	mitochondrion	20.39	8.76
Bra033017.1-P	Field mustard	plastid	23.68	7.47
Bra025285.1-P	Field mustard	plastid	23.68	6.78
Bra015127.1-P	Field mustard	plastid	19.08	6.67
Bra033883.1-P	Field mustard	mitochondrion	36.18	6.35
Bra036865.1-P	Field mustard	plastid	30.92	5.47
Bra039123.1-P	Field mustard	plastid	35.53	5.45
Bra023555.1-P	Field mustard	golgi	30.92	4.27
Bra036994.1-P	Field mustard	nucleus	17.76	3.64
Bra024132.1-P	Field mustard	cytosol, plasma membrane, plastid	0.66	1.01

Protein Annotations

EnsemblPlants:Bra022317.1	EnsemblPlants:Bra022317.1-P	EnsemblPlantsGene:Bra022317	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	InterPro:RNA-binding_CRM	InterPro:YhbY_like_sf	PANTHER:PTHR31846
PANTHER:PTHR31846:SF4	PFAM:PF01985	PFscan:PS51295	SUPFAM:SSF75471	UniParc:UPI0002548161	UniProt:M4E0M0
MapMan:35.1	:	:	:	:	:

Description

AT3G18390 (E=2e-035) EMB1865 | EMB1865 (embryo defective 1865); RNA binding

Coordinates

chrA05:-:18447398..18448202

Molecular Weight (calculated)

17257.2 Da

IEP (calculated)

10.431

GRAVY (calculated)

-0.063

Length

152 amino acids

Sequence
(BLAST)

001: MHLHWKHREL VKLISKQKSL AFVENTARLL EYESGGVLVA IENVPKGFAL IYYRGKNYQR PRNLLDKSKA LKRSIAMQRH EVRKFLNYKL HFNVLSKLIA
101: AVAYGSFKLW AAAPKPLPGE NSGSSTSEEC GELRVTNVCV FVAYFILSFA IA

Best Arabidopsis Sequence Match ( AT3G18390.1 )
(BLAST)

001: MALAPLNFTE MPLRSSLPLT SSSRYCSSPS LHALLFYSLG VKPSRQQIVR PFSSLRTSER SNNRSNNNRR LDQRNHKPTP PWIDKWPPSS SGAGGDHAGK
101: KGGENNGGDR IRSAEEEAEA KLRYLEKDKG QNAIERIVLR LRNLGLGSDD EDDVEDDEGG GINGGDVKPV TGEERLGDLL KREWVRPDMM LAEGEESEEE
201: DEVLLPWEKN EEEQAAERVV GEGGVAVMQK RRARAPSLAE LTVEDSELRR LRRDGMYLRV RINIPKAGLT QAVMEKIYDT WRKEELVRLK FHEVLARDMK
301: TAHEIVERRT GGMVIWRAGS VMVVYRGLDY KGPPVISNQM AGPKETLFVP DVSSAGDEAT NAKDNQSAPL VIKDPIIKNP IRKENMTEEE VEFNSLLDSL
401: GPRFQEWWGT GVLPVDADLL PPTIPGYKTP FRLLPTGMRS NLTNAEMTNL RKIGKTLPCH FALGRNRNHQ GLAAAILQIW EKSLIAKIAV KRGIQNTNNK
501: LMADEVKTLT GGVLLLRNKY YIVIYRGKDF LPSSVAATLA ERQELTKEIQ DVEERVRNRE IEAVQPVGDK VPAEAGTLAE FYEAQARWGK EITPDHREKM
601: IEEASRVANA RVVKRIQHKL NLAQSKFQRA EKLLSKIEAS MIPNGPDYDQ EVISEEERAM FRKVGLKMKA YLPIGIRGVF DGVIENMHLH WKHRELVKLI
701: SKQKNQAFVE ETARLLEYES GGVLVAIEKV PKGFALIYYR GKNYRRPISL RPRNLLTKAK ALKRSIAMQR HEALSQHISE LERTIEQMQS QLTSKNPSYS
801: ESEWENDEDD DDDEEEEKDD VEDNESDWDE TDGESAISSI EEADMSSR

Arabidopsis Description

EMB1865CRS1 / YhbY (CRM) domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q9LS51]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.