CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03629
KRH20178
KRH24006
KRH24392
KRH27971
KRH29310
KRH29374
KRH51475
KRH60786
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01370.1	KRH24006	AT3G48150.1	21798944
AT3G01370.1	KRH27971	AT3G48150.1	21798944
AT3G01370.1	KRH29310	AT3G48150.1	21798944
AT3G01370.1	KRH77487	AT3G48150.1	21798944
AT3G01370.1	KRH24392	AT4G39050.1	21798944
AT3G01370.1	KRH29374	AT4G39050.1	21798944
AT3G01370.1	KRH51475	AT4G39050.1	21798944
AT3G01370.1	KRH60786	AT4G39050.1	21798944
AT3G01370.1	KRH03629	AT5G20280.1	21798944
AT3G01370.1	KRH20178	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93411	Soybean	plastid	64.56	64.12
PGSC0003DMT400069622	Potato	cytosol	15.19	62.15
Solyc08g044250.1.1	Tomato	mitochondrion	3.31	61.82
VIT_14s0066g01910.t01	Wine grape	cytosol	53.26	52.39
CDY49049	Canola	plastid	48.59	51.13
CDY37526	Canola	plastid	48.39	50.66
Bra039123.1-P	Field mustard	plastid	48.3	50.05
AT3G01370.1	Thale cress	plastid	48.78	49.55
PGSC0003DMT400003527	Potato	plastid	48.88	47.86
GSMUA_Achr10P...	Banana	plastid	44.21	45.45
OQU81723	Sorghum	plastid	45.18	44.4
Zm00001d025633_P007	Maize	plastid	44.21	43.7
Zm00001d025629_P007	Maize	plastid	44.21	43.7
Os04t0464800-00	Rice	plastid	36.32	43.52
TraesCS2B01G346500.1	Wheat	plastid	43.62	41.29
TraesCS2D01G327400.1	Wheat	plastid	43.33	41.01
HORVU2Hr1G081140.2	Barley	plastid	43.43	40.99
Solyc02g087250.2.1	Tomato	extracellular	49.66	40.44
TraesCS2A01G335400.1	Wheat	plastid	43.43	39.89
KRH41639	Soybean	mitochondrion, plastid	24.93	35.21
KRH39182	Soybean	plastid	25.71	33.38
KRH48490	Soybean	nucleus	25.51	33.12
KRG92332	Soybean	plastid	26.1	32.1
KRH34465	Soybean	plastid	24.15	30.81
KRH02705	Soybean	plastid	23.66	30.6
KRH01727	Soybean	plastid	21.91	30.12
KRH70401	Soybean	plastid	15.29	26.75
KRH07419	Soybean	cytosol	5.84	22.99
KRH29618	Soybean	nucleus	6.13	22.18
KRH41679	Soybean	mitochondrion	7.79	21.56
KRH60382	Soybean	mitochondrion	7.5	20.75
KRH69093	Soybean	mitochondrion	8.18	18.79
KRH24621	Soybean	mitochondrion	7.79	18.74
KRH71856	Soybean	nucleus	8.08	16.02
KRH65957	Soybean	cytosol, mitochondrion, nucleus, plastid	7.5	15.43
KRH56532	Soybean	mitochondrion	8.76	13.78
KRG93197	Soybean	mitochondrion	8.67	13.63

Protein Annotations

EntrezGene:100799724	MapMan:16.12.2.1.2	Gene3D:3.30.110.60	EMBL:ACUP02011551	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G014000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1N5X8	InterPro:IPR001890
InterPro:IPR035920	EnsemblPlants:KRG93409	ProteinID:KRG93409	ProteinID:KRG93409.1	PFAM:PF01985	PFscan:PS51295
PANTHER:PTHR31846	PANTHER:PTHR31846:SF16	InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI000233F31E
InterPro:YhbY_like_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:1316793..1324308

Molecular Weight (calculated)

114462.0 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.532

Length

1027 amino acids

Sequence
(BLAST)

0001: MLLPATHFHY FHTFPSSSSS SSSSSSSSST LHIFPLQFPK PKPKFLIRCS DTETLPDSAI QRIADKLRSL GIADQPSTAT PGPSDSDAGE IFVPLPQQLP
0101: TRRVGHTIDP TWAKRERRED KVPTLAELSL SDAEIRRLTT AGLAMRQKLR VGKAGLTEGI VNGIHERWRS FEVVRIVCED LSRFNMKRTH DLLERKTGGL
0201: VVWRSGSKII LYRGTDYKYP YFLSDKVSRD DNTGDAMQHM DEDAKNFDKR ESHSSEKNSV TYAGKSSNVK TAKPALIQGV GSPNKVRFQL PGEAELAKDA
0301: DSLLTGIGPR FIDWWGYDPL PVDADLLPAV IPGYRKPFRL LPYGVKPKLT DDEMTTMRRL GKHLPCHFAL GRNKKLHGLA AAIIKLWERC EIVKIAIKRG
0401: VLNTNGELMA EEIKYLTGGT LIARDKEFIV FYRGKDFLPT AVSSAIEQRR SIGMYKLKTR NSLSVTDDPD LKDGTIECDS EVKGMNFKKD TKQGMLTEAE
0501: AAIKSTSIKL SMALEEKAKA EKLLSELENA ESPQEEEINK EGITEEEKYM LRRIGLKMSP FLLLGRRGVF DGTVENMHLH WKYRELVKII CNKQMSLEDV
0601: QQIAQTLEAE SGGILIAVER VNKSYAIIVY RGKNYSRPAS LRPRTLLNKK QALKRSIEAQ RCESLKLHVL KLDRNINELK HQMAKDMEAN SKQTSVDNQQ
0701: AIQEQPVELI DSGGAHQAEP GNSINWNYPK EASVDYQQTM QEQSVELFDG GGAVQSEPQN SINWNSPKEA SVDNQQAIQG QSFELIDRSE AHHGEPENSI
0801: DWNSPEEASV DNQQAIQGQP VELIDGGGAH QDEPESWSGL IPKETKLDRD SDSVVDTQHC VSISKVMESS IVASESDPDL SALVRDMSSN ELPSRSVYLS
0901: NRERLLLRKQ ALKMKKRPVL SVGKSNIVTG LAKAIKAHFQ KHPLAIVNVK GRAKGTSIQE VVSKLEQETG AVLVSQELNK VILYRGWGEG EKPSTAINFD
1001: KVGKEVAAKP GVSPELLEAI RVECGLQ

Best Arabidopsis Sequence Match ( AT3G01370.1 )
(BLAST)

0001: MLLPLFHQQP LILAKTFPDR IFPPFLVPNT LVSRRNVSRA NSGIFCSSAS GRKTLPQSAI QRIAEKLRSL GFVEEKHDSP TRRITGEESG KNSPGEIFVP
0101: LPKQLPIHRV GHTIDTSWST PSYPVPKPGS GTAISRYHEL KRVWKKETEM ERKKEEKVPS LAELTLPPAE LRRLRTVGIR LTKKLKIGKA GITEGIVNGI
0201: HERWRTTEVV KIFCEDISRM NMKRTHDVLE TKTGGLVIWR SGSKILLYRG VNYQYPYFVS DRDLAHEAAS GASSMDQGVV DSREKQSIAE SSAPSITNKM
0301: VKPMLTQGVG SPDKVRFQLP GEVQLVEEAD RLLEGLGPRF TDWWAYDPLP VDGDLLPAVV PDYRRPFRLL PYGVSPKLTD DEMTTIRRLG RPLPCHFALG
0401: RNRNLQGLAV AIVKLWEKCE LAKIAVKRGV QNTNSELMAE ELKWLTGGTL ISRDKDFIVL YRGKDFLPSA VSSAIEERRR QTMIMENSSV HGNKLTENEE
0501: EIKPRAVKED IELEAKDQKD HIQTHQMKSR QRNSPEAILE KTSMKLSMAL EKKANAEKVL ADLENRESPQ LSDIDKEGIT NDEKYMLRKI GLKMKPFLLL
0601: GRRGVFDGTI ENMHLHWKYR ELVKIICNEY SIEAAHKVAE ILEAESGGIL VAVEMVSKGY AIIVYRGKNY ERPQCLRPQT LLSKREALKR SVEAQRRKSL
0701: KLHVLKLSNN IEELNRQLVE DSATNETWSD GESSNMMVEE ETENQHTEPE KAREKIELGY SSDLSVPSSG EENWEDDSEG EVDPLTTSSQ EYQEDESESA
0801: SSQRHEGNSL DSTANLSVFA ETGSANASSF HDRSLPHNSF LNANRKLPGS STGSGSQISA LRERKSENDG LVTDLSNRER LILRKQALKM KKRPPFAVGR
0901: SNVVTGLART LKMHFQKNPL AIVNVKGRAN GTSVQEVIAK LKEETGALLV SQEPSKVILY RGWGAEEEMK SFYPNNNVKS SINLPSTRSF VDDPPHVSPA
1001: LIEAIRLECG L

Arabidopsis Description

CFM2CRM-domain containing factor CFM2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8L7C2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.