Factsheet for PGSC0003DMT400039655

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014280.1.1	Tomato	mitochondrion, plastid	95.2	91.28
PGSC0003DMT400030768	Potato	mitochondrion	79.55	85.6
Bra011945.1-P	Field mustard	mitochondrion	32.07	65.8
Bra000492.1-P	Field mustard	mitochondrion	53.28	59.6
AT2G28480.1	Thale cress	mitochondrion	55.56	59.14
KRH29618	Soybean	nucleus	42.17	58.8
CDY31205	Canola	mitochondrion	53.54	56.99
CDX83289	Canola	mitochondrion	53.03	56.45
VIT_05s0102g00700.t01	Wine grape	plastid	58.59	55.77
KRH24621	Soybean	mitochondrion	57.07	52.93
TraesCS3D01G505800.1	Wheat	mitochondrion	50.76	51.15
TraesCS3B01G562100.1	Wheat	mitochondrion	50.76	50.76
Zm00001d042043_P001	Maize	mitochondrion	50.0	50.25
HORVU3Hr1G110360.1	Barley	mitochondrion	50.25	49.75
EES02081	Sorghum	mitochondrion	50.76	49.63
Os01t0958400-02	Rice	mitochondrion	51.26	48.68
GSMUA_Achr3P16860_001	Banana	mitochondrion	53.28	47.2
CDY15751	Canola	mitochondrion, plastid, vacuole	40.66	46.4
TraesCS3A01G499000.2	Wheat	mitochondrion, nucleus	50.51	46.08
PGSC0003DMT400032783	Potato	mitochondrion	30.3	43.32
PGSC0003DMT400071187	Potato	mitochondrion	27.27	23.28
PGSC0003DMT400015748	Potato	nucleus, plastid	24.75	18.39
PGSC0003DMT400069622	Potato	cytosol	8.08	12.75
PGSC0003DMT400014644	Potato	plastid	19.7	9.47
PGSC0003DMT400056675	Potato	cytosol, plastid	17.17	8.31
PGSC0003DMT400002898	Potato	mitochondrion	18.43	8.27
PGSC0003DMT400067878	Potato	plastid	16.16	7.98
PGSC0003DMT400003527	Potato	plastid	19.44	7.34

Protein Annotations

EntrezGene:102602316	Gene3D:3.30.110.60	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR001890	InterPro:IPR035920	UniProt:M1B8L1	PFAM:PF01985
EnsemblPlantsGene:PGSC0003DMG400015335	PGSC:PGSC0003DMG400015335	EnsemblPlants:PGSC0003DMT400039655	PFscan:PS51295	PANTHER:PTHR31426	PANTHER:PTHR31426:SF2
InterPro:RNA-binding_CRM	SMART:SM01103	SUPFAM:SSF75471	UniParc:UPI00029615AD	RefSeq:XP_006358938.1	InterPro:YhbY_like_sf
SEG:seg	:	:	:	:	:

Description

Group II intron splicing factor CRS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015335]

Coordinates

chr12:-:221516..226492

Molecular Weight (calculated)

46015.8 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.886

Length

396 amino acids

Sequence
(BLAST)

001: MTNPLFRGFR RLALLSLSKP LSSSSTSSRP ILGNPENFLH LSRLVLKDRL IQQNPCWESR NFSHGRVDFV ITRDGKLKFE EHEVEAPKTE KWKTKKKLKL
101: QRKREKKKRK AANKRDPRRL GVQGKKKKQK FDTAEERIKQ KIENAKVKEA MLIERLKRYE VSKVQGPEVK PHFLTGEERF YIKKMAQKKS NYVPIGKRGV
201: FGGVILNMHL HWKRHETVKV ICKPCKPGQI QEYVDEIARL SGGIPIQIIA TDTIVFYRGR EYVQPEIMYP IDTLSKKRAL EKSKYEQSLE SVRHFIAIAE
301: KELALYYRHV ALYDDPNNQS SYSILDDSRS TSEKRNDEIG EENYSAGESI SSDLELPQID DYCSDDKQSL SEFEFEDTDE SSSDDLDSGE EETSNY

Best Arabidopsis Sequence Match ( AT2G28480.1 )
(BLAST)

001: MAIAFARGLR KASSFLRSSY PLLISSRLLP ISQEFYDSTL TFVLPTRPIC RNFSHGYGTV NLVISEGKPK FETRELDPPK KYKWLTKKRL KLKRKKEREE
101: RNAANRKDPR RLTVKGKKKK FVNAEERIKY KLEKAKIKEA LLIERLKRYE VAKVQGPEVR PHEITGEERF YLKKMGQKRS NYVPIGRRGV FGGVILNMHL
201: HWKKHETVKV ICNNSKPGQV QQYAEELAKL SGGVPVNIIG DDTIIFYRGK GYVQPQVMSP IDTLSKKRAY EKSKYEQSLE SVRHFIAIAE KELELYYRHV
301: ALYDDPNNRN PLSILDDSPS ESRQHHENEF FLSCSDTDSS SEDEDEDEEL CELDNGSSSS SSAKEELSES EN

Arabidopsis Description

At2g28480 [Source:UniProtKB/TrEMBL;Acc:Q9SK10]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.