Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017974.1-P | Field mustard | cytosol | 72.34 | 79.07 |
| CDY08148 | Canola | cytosol | 75.53 | 76.34 |
| AT3G49570.1 | Thale cress | cytosol | 74.47 | 72.16 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 64.89 | 64.89 |
| AT5G24655.1 | Thale cress | cytosol | 58.51 | 59.78 |
| Solyc03g096780.1.1 | Tomato | nucleus | 48.94 | 40.71 |
| PGSC0003DMT400001474 | Potato | plastid | 47.87 | 38.46 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 46.81 | 36.67 |
| PGSC0003DMT400001476 | Potato | plastid | 43.62 | 36.61 |
| Solyc03g096760.1.1 | Tomato | plastid | 43.62 | 36.61 |
| KRH64261 | Soybean | nucleus | 45.74 | 35.54 |
| PGSC0003DMT400001475 | Potato | plastid | 43.62 | 34.75 |
| PGSC0003DMT400069515 | Potato | cytosol | 41.49 | 34.51 |
| Solyc03g096770.1.1 | Tomato | nucleus | 41.49 | 33.91 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 40.43 | 33.33 |
| KRH16959 | Soybean | nucleus | 35.11 | 28.21 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 40.43 | 27.74 |
Protein Annotations
| MapMan:35.1 | EntrezGene:824120 | UniProt:A0A178VF66 | ProteinID:AEE78559.1 | ProteinID:AEE78560.1 | EMBL:AK117604 |
| ArrayExpress:AT3G49580 | EnsemblPlantsGene:AT3G49580 | RefSeq:AT3G49580 | TAIR:AT3G49580 | RefSeq:AT3G49580-TAIR-G | EnsemblPlants:AT3G49580.1 |
| TAIR:AT3G49580.1 | EMBL:AY086614 | EMBL:BT005036 | ProteinID:CAB62462.1 | ncoils:Coil | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 |
| GO:GO:0009991 | GO:GO:0010438 | GO:GO:0033554 | Symbol:LSU1 | RefSeq:NP_001190042.1 | RefSeq:NP_190527.1 |
| ProteinID:OAP04919.1 | PO:PO:0000013 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007616 | PO:PO:0009006 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025195 | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | UniProt:Q9SCK1 | UniParc:UPI000000C53E | SEG:seg |
Description
LSU1LSU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VF66]
Coordinates
chr3:-:18375233..18375940
Molecular Weight (calculated)
10781.8 Da
IEP (calculated)
4.310
GRAVY (calculated)
-0.401
Length
94 amino acids
Sequence
(BLAST)
(BLAST)
1: MANRGGCVTV AAEEMDELRR RNIELSREVA EMKTEMIKLW QRTVVAEEAE EQLCSQLAEL EVESLEQARD YHDRMLFLMD QISRLSSSSV VSSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.