Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g086840.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05625.1 | Solyc02g086840.2.1 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P06550_001 | Banana | plastid | 60.64 | 61.63 |
| CDY67876 | Canola | plastid | 63.45 | 60.77 |
| CDX74136 | Canola | plastid | 63.05 | 60.62 |
| Bra001158.1-P | Field mustard | plastid | 63.05 | 60.38 |
| PGSC0003DMT400094170 | Potato | cytosol, mitochondrion, nucleus | 39.76 | 60.37 |
| KRH33866 | Soybean | plastid | 61.45 | 60.0 |
| AT3G05625.1 | Thale cress | plastid | 61.85 | 59.92 |
| TraesCS1A01G354500.1 | Wheat | plastid | 59.04 | 55.68 |
| TraesCS1B01G367300.2 | Wheat | plastid | 58.63 | 55.3 |
| Zm00001d009189_P001 | Maize | plastid | 43.37 | 49.54 |
| OQU86823 | Sorghum | plastid | 55.42 | 46.31 |
| TraesCS1D01G356000.3 | Wheat | plastid | 54.22 | 45.0 |
| VIT_14s0060g02060.t01 | Wine grape | plastid | 64.26 | 33.61 |
| Os01t0343500-01 | Rice | plastid | 14.46 | 31.3 |
Protein Annotations
| EnsemblPlants:Solyc10g044710.1.1 | EnsemblPlantsGene:Solyc10g044710.1 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | PFscan:PS50293 | SUPFAM:SSF48452 |
| UniParc:UPI000276B1DF | UniProt:K4CZJ2 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr10:-:27518120..27520859
Molecular Weight (calculated)
28676.2 Da
IEP (calculated)
8.255
GRAVY (calculated)
-0.432
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MAITHIYHVR VQPSVMKPFD KCYLGGKVVF GSRIQTYQNP VPTLSRRVFV CRVWDALTSG NSAVMAIRKG MHLFRQGDVL GSLVEFDKAI QLDPRQKAYL
101: WQRGLSLYYL DRYEEGAHQF RIDVAQNPND TEESIWCFLC EAQLYGVHEA RKRYLEVGRD PRPVMREAYN MFKDGGDPEK LVAAFLSGRP NEYFYASLYA
201: GLYYESQNEP DEGKVHLIAA CQSPYGSRSD DYMAALSKVH CKCRNWNIN
101: WQRGLSLYYL DRYEEGAHQF RIDVAQNPND TEESIWCFLC EAQLYGVHEA RKRYLEVGRD PRPVMREAYN MFKDGGDPEK LVAAFLSGRP NEYFYASLYA
201: GLYYESQNEP DEGKVHLIAA CQSPYGSRSD DYMAALSKVH CKCRNWNIN
001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
Arabidopsis Description
At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.