Factsheet for Zm00001d009189_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d013465_P001
Zm00001d017793_P001
Zm00001d033680_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	Zm00001d013465_P001	AT1G14920.1	21798944
AT3G05625.1	Zm00001d033680_P001	AT1G14920.1	21798944
AT3G05625.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT3G05625.1	Zm00001d051589_P001	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G354500.1	Wheat	plastid	66.97	55.3
TraesCS1B01G367300.2	Wheat	plastid	66.51	54.92
Os01t0343500-01	Rice	plastid	28.44	53.91
GSMUA_Achr8P06550_001	Banana	plastid	58.26	51.84
OQU86823	Sorghum	plastid	69.27	50.67
CDY67876	Canola	plastid	54.59	45.77
TraesCS1D01G356000.3	Wheat	plastid	62.84	45.67
CDX74136	Canola	plastid	54.13	45.56
AT3G05625.1	Thale cress	plastid	53.67	45.53
Bra001158.1-P	Field mustard	plastid	53.67	45.0
Solyc10g044710.1.1	Tomato	plastid	49.54	43.37
KRH33866	Soybean	plastid	50.0	42.75
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	19.27	25.61
VIT_14s0060g02060.t01	Wine grape	plastid	50.92	23.32

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	UniProt:A0A1D6FI49	ProteinID:AQK91477.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFscan:PS50005
PFscan:PS50293	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0008441FEA
EnsemblPlantsGene:Zm00001d009189	EnsemblPlants:Zm00001d009189_P001	EnsemblPlants:Zm00001d009189_T001	SEG:seg	:	:

Description

TPR repeat%3B TPR repeat-containing domain protein

Coordinates

chr8:+:41985030..41995700

Molecular Weight (calculated)

23409.2 Da

IEP (calculated)

8.974

GRAVY (calculated)

0.050

Length

218 amino acids

Sequence
(BLAST)

001: MAPAFPTTLL HQASTSFRFP AGAAGCIRPH CLAPLAAPTT LSLAATPAVP RRLLLPVAAG IWDLISGGAG AAAAASLAVR RGMQLFRQGD VAGSLAEFDK
101: AIEMDPRQKQ YLWQRGLSLY YLDRCVGLDS RPVMREAYAL LRSGADPEKL VAKFSSGTDG EVFYSSLYAG LYYESQKDAD MAKSHIVAAC KSPYGSRSGD
201: YMASLALVHC QCRNWKVV

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.