Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0708400-01 | |
| Os03t0707600-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05625.1 | Os03t0707600-01 | AT1G14920.1 | 21798944 |
| AT3G05625.1 | Os02t0708400-01 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G354500.1 | Wheat | plastid | 71.3 | 31.06 |
| TraesCS1B01G367300.2 | Wheat | plastid | 70.43 | 30.68 |
| Zm00001d009189_P001 | Maize | plastid | 53.91 | 28.44 |
| TraesCS1D01G356000.3 | Wheat | plastid | 71.3 | 27.33 |
| GSMUA_Achr8P06550_001 | Banana | plastid | 47.83 | 22.45 |
| OQU86823 | Sorghum | plastid | 53.04 | 20.47 |
| KRH33866 | Soybean | plastid | 38.26 | 17.25 |
| AT3G05625.1 | Thale cress | plastid | 38.26 | 17.12 |
| CDX74136 | Canola | plastid | 34.78 | 15.44 |
| Bra001158.1-P | Field mustard | plastid | 34.78 | 15.38 |
| CDY67876 | Canola | plastid | 34.78 | 15.38 |
| Solyc10g044710.1.1 | Tomato | plastid | 31.3 | 14.46 |
| VIT_14s0060g02060.t01 | Wine grape | plastid | 33.04 | 7.98 |
| PGSC0003DMT400094170 | Potato | cytosol, mitochondrion, nucleus | 8.7 | 6.1 |
Protein Annotations
| EMBL:AK071988 | EnsemblPlants:Os01t0343500-01 | EnsemblPlantsGene:Os01g0343500 | ProteinID:BAF04874.1 | ProteinID:BAS71991.1 | SEG:seg |
| UniParc:UPI0000DD8AE5 | UniProt:Q0JN04 | MapMan:35.2 | : | : | : |
Description
Similar to TPR repeat. (Os01t0343500-01)
Coordinates
chr1:-:13582038..13584915
Molecular Weight (calculated)
11745.2 Da
IEP (calculated)
11.396
GRAVY (calculated)
0.121
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSTSMSVRS PASFPFPTAA GARGRVGSAQ PVGPKLLSSP LPPAATPAVP RRLLFPVAAG IWDFLSGGGA GGAAAASLAV RGGMQLFRQG DVAGSVAEFD
101: RAIELDQRQK KCMYL
101: RAIELDQRQK KCMYL
001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKVLRH VS
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKVLRH VS
Arabidopsis Description
At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.