CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH42544
KRH56614
KRH58636

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	KRH42544	AT1G14920.1	21798944
AT3G05625.1	KRH58636	AT1G14920.1	21798944
AT3G05625.1	KRG93305	AT3G27960.1	21798944
AT3G05625.1	KRH56614	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P06550_001	Banana	plastid	61.18	63.67
Solyc10g044710.1.1	Tomato	plastid	60.0	61.45
CDY67876	Canola	plastid	60.39	59.23
CDX74136	Canola	plastid	59.22	58.3
Bra001158.1-P	Field mustard	plastid	59.22	58.08
AT3G05625.1	Thale cress	plastid	58.43	57.98
TraesCS1A01G354500.1	Wheat	plastid	59.22	57.2
TraesCS1B01G367300.2	Wheat	plastid	58.82	56.82
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	32.55	50.61
Zm00001d009189_P001	Maize	plastid	42.75	50.0
TraesCS1D01G356000.3	Wheat	plastid	55.29	47.0
OQU86823	Sorghum	plastid	54.12	46.31
Os01t0343500-01	Rice	plastid	17.25	38.26
VIT_14s0060g02060.t01	Wine grape	plastid	63.92	34.24

Protein Annotations

EMBL:ACUP02006561	EMBL:ACUP02006562	EnsemblPlants:KRH33866	EnsemblPlantsGene:GLYMA_10G150300	Gene3D:1.25.40.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	PFscan:PS50005	PFscan:PS50293	ProteinID:KRH33866	ProteinID:KRH33866.1
SMART:SM00028	SUPFAM:SSF48452	UniParc:UPI000233CF10	UniProt:A0A0R0HTC2	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr10:-:38566775..38570603

Molecular Weight (calculated)

28653.1 Da

IEP (calculated)

8.451

GRAVY (calculated)

-0.199

Length

255 amino acids

Sequence
(BLAST)

001: MSAFISHNLK PGGIMVSPSL HHRSSFPLQL SLKAPFSASH PLVLTRRLFL PSVSGIWDAL TGGNNNNARE AVLAIRRGML LFRQGDVSGS LAEFDKAIQL
101: DPRQKAYLWQ RGLSLYYLNR FEEAAEQFRL DVAQNPNDTE ESIWCFLCEA QLFGVDEARK RYLEVAETQA SHAGSIYMFK MVGIRKLVAA FSGSREGEYF
201: YASLYAGLYY ESQNGTDAAK VHIVAACQSP YGQRSDDYMA SLAKVHCRCR NWVFN

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.