Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH33866 | Soybean | plastid | 63.67 | 61.18 |
| AT3G05625.1 | Thale cress | plastid | 63.67 | 60.7 |
| Solyc10g044710.1.1 | Tomato | plastid | 61.63 | 60.64 |
| CDX74136 | Canola | plastid | 64.08 | 60.62 |
| CDY67876 | Canola | plastid | 63.67 | 60.0 |
| Bra001158.1-P | Field mustard | plastid | 63.27 | 59.62 |
| TraesCS1A01G354500.1 | Wheat | plastid | 63.27 | 58.71 |
| TraesCS1B01G367300.2 | Wheat | plastid | 63.27 | 58.71 |
| Zm00001d009189_P001 | Maize | plastid | 51.84 | 58.26 |
| TraesCS1D01G356000.3 | Wheat | plastid | 60.0 | 49.0 |
| OQU86823 | Sorghum | plastid | 59.59 | 48.99 |
| Os01t0343500-01 | Rice | plastid | 22.45 | 47.83 |
| PGSC0003DMT400094170 | Potato | cytosol, mitochondrion, nucleus | 28.57 | 42.68 |
| VIT_14s0060g02060.t01 | Wine grape | plastid | 65.31 | 33.61 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 |
| EnsemblPlantsGene:GSMUA_Achr8G06550_001 | EnsemblPlants:GSMUA_Achr8P06550_001 | EnsemblPlants:GSMUA_Achr8T06550_001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| UniProt:M0TN58 | PFscan:PS50005 | PFscan:PS50293 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf |
| InterPro:TPR_repeat | UniParc:UPI0002966FB9 | SEG:seg | : | : | : |
Description
TPR repeat, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G06550_001]
Coordinates
chr8:-:4252579..4256290
Molecular Weight (calculated)
27358.3 Da
IEP (calculated)
6.272
GRAVY (calculated)
-0.252
Length
245 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSSTLSVAA LSSFRHGTEA SAINPLPFQN PRHRAFFPSL PLPRRIFLPT ASASIWDALT GGGGAARDAS LAVRRGMLLF RQGDVSGSLA EFDRAVELDP
101: RQKAYLWQRG LSLYYLNRFE EGAEQFRLDV AKNPNDTEES IWCFLCEAQL YGVGRDSRPV MREAYSMFKD GGDPKKLVEI FANGRADEYF YASLYAGLYY
201: ESQNDTDVAK LQIVAACQCP YGSRSDDYMA ALAKVHCLCR DWSIS
101: RQKAYLWQRG LSLYYLNRFE EGAEQFRLDV AKNPNDTEES IWCFLCEAQL YGVGRDSRPV MREAYSMFKD GGDPKKLVEI FANGRADEYF YASLYAGLYY
201: ESQNDTDVAK LQIVAACQCP YGSRSDDYMA ALAKVHCLCR DWSIS
001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
Arabidopsis Description
At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.