Factsheet for VIT_14s0060g02060.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g05260.t01
VIT_14s0066g01280.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	VIT_01s0011g05260.t01	AT1G14920.1	21798944
AT3G05625.1	VIT_14s0066g01280.t01	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P06550_001	Banana	plastid	33.61	65.31
Solyc10g044710.1.1	Tomato	plastid	33.61	64.26
KRH33866	Soybean	plastid	34.24	63.92
AT3G05625.1	Thale cress	plastid	34.03	63.03
CDY67876	Canola	plastid	34.24	62.69
CDX74136	Canola	plastid	34.03	62.55
Bra001158.1-P	Field mustard	plastid	34.03	62.31
TraesCS1A01G354500.1	Wheat	plastid	31.51	56.82
TraesCS1B01G367300.2	Wheat	plastid	31.3	56.44
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	17.65	51.22
Zm00001d009189_P001	Maize	plastid	23.32	50.92
OQU86823	Sorghum	plastid	29.83	47.65
TraesCS1D01G356000.3	Wheat	plastid	29.41	46.67
Os01t0343500-01	Rice	plastid	7.98	33.04

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100240883	wikigene:100240883	EntrezGene:100256314	wikigene:100256314	MapMan:13.2.5.2.2
Gene3D:2.40.50.140	ProteinID:CCB61868	ProteinID:CCB61868.1	UniProt:F6I4N1	EMBL:FN596746	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003697	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:1990879	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	EntrezGene:LOC100240883	wikigene:LOC100240883	EntrezGene:LOC100256314	wikigene:LOC100256314	PFAM:PF15490
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR33905	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	InterPro:Ten1_animal_plant	UniParc:UPI000210A893	ArrayExpress:VIT_14s0060g02060	EnsemblPlantsGene:VIT_14s0060g02060	EnsemblPlants:VIT_14s0060g02060.t01
RefSeq:XP_002279298	RefSeq:XP_002279298.1	RefSeq:XP_002283567	RefSeq:XP_002283567.1	RefSeq:XP_003633604	RefSeq:XP_003633604.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:+:1641517..1649680

Molecular Weight (calculated)

53150.9 Da

IEP (calculated)

7.072

GRAVY (calculated)

-0.180

Length

476 amino acids

Sequence
(BLAST)

001: MAVAISQSSK LTISIASSFS NSSSSSSLSF SVIKPLSSSP FFTTTASRIH SHQTPFHSLS RRLFLPSVSG IWNALTGGDS YRESAMAIRR GMLLFRQGDV
101: SGSLVEFDKA IELDPRQKAY LWQRGLSLYY LDRFEEGAEQ FRLDVAQNPN DTEESIWCFL CEAQLYGADE ARRRFLEVGR DPRPVMREAY NMFKDGGDPE
201: KLVAQFSGNQ AGEYFYASLY AGLYYESQND PGSAKLHLLA ACQSPYGQRS DDYMASLAKL LKIGWFKTIF RFNHHPFKTH RFDFDFIGVT PAVVFSPQND
301: TVFTASSALA SLLRISDDEP NVRKMIRSFN PLFVVTFILL SFGFAERSSG SMMSSAVKSG ALVSLQDLQP SSPFFKQGAS LRVTGKLQEY SVETAIAIVI
401: DGSANLKINT QHLRDLTFRA GSIYQFIGEL LIQPDNEAIL QARVGRNVDG IDLNLYHQSL QLVRQFQADH MNDQAA

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.