CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	CDX86457	AT3G27960.1	21798944
AT3G05625.1	CDY58518	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001158.1-P	Field mustard	plastid	96.91	96.54
CDY67876	Canola	plastid	96.91	96.54
AT3G05625.1	Thale cress	plastid	88.8	89.49
GSMUA_Achr8P06550_001	Banana	plastid	60.62	64.08
Solyc10g044710.1.1	Tomato	plastid	60.62	63.05
KRH33866	Soybean	plastid	58.3	59.22
TraesCS1A01G354500.1	Wheat	plastid	57.53	56.44
TraesCS1B01G367300.2	Wheat	plastid	56.76	55.68
Zm00001d009189_P001	Maize	plastid	45.56	54.13
OQU86823	Sorghum	plastid	54.44	47.32
TraesCS1D01G356000.3	Wheat	plastid	54.05	46.67
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	29.34	46.34
Os01t0343500-01	Rice	plastid	15.44	34.78
VIT_14s0060g02060.t01	Wine grape	plastid	62.55	34.03

Protein Annotations

EnsemblPlants:CDX74136	EnsemblPlantsGene:GSBRNA2T00111895001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PFscan:PS50293	ProteinID:CDX74136
ProteinID:CDX74136.1	SUPFAM:SSF48452	UniParc:UPI0004EE7C81	MapMan:35.2	:	:

Description

BnaA03g29110D

Coordinates

chrLK031800:-:1507424..1509070

Molecular Weight (calculated)

29073.4 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.317

Length

259 amino acids

Sequence
(BLAST)

001: MALTHIVNPI IYSSPTIPRR FAAISPLKTL NPQFSRHTPH VQALSRRLFL PSVSSIWDAI TGGGDSNPRE AIAAIRNGMQ LFRQGDVSGS VTEFDKAILL
101: DSRQKAYLWQ RGLSLYYMDR FEEGAEQFRL DVAQNPNDTE ESIWCFLCEA RLHGVDVARK QFLEVGRDSR PVMREAYNLF KNGGDPEKLV NDFLSGQASE
201: VFYASLYAGL YYEAEGKSEK AKFHITAACG SPYGQRSDDY MASLAKVHCL CRNWSSGLV

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.