CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER93592
EES05647

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	EER93592	AT1G14920.1	21798944
AT3G05625.1	EES05647	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009189_P001	Maize	plastid	50.67	69.27
TraesCS1A01G354500.1	Wheat	plastid	60.07	67.8
TraesCS1B01G367300.2	Wheat	plastid	59.73	67.42
GSMUA_Achr8P06550_001	Banana	plastid	48.99	59.59
TraesCS1D01G356000.3	Wheat	plastid	59.4	59.0
AT3G05625.1	Thale cress	plastid	48.32	56.03
Solyc10g044710.1.1	Tomato	plastid	46.31	55.42
CDY67876	Canola	plastid	47.65	54.62
CDX74136	Canola	plastid	47.32	54.44
KRH33866	Soybean	plastid	46.31	54.12
Bra001158.1-P	Field mustard	plastid	46.64	53.46
Os01t0343500-01	Rice	plastid	20.47	53.04
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	26.85	48.78
VIT_14s0060g02060.t01	Wine grape	plastid	47.65	29.83

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.2	EntrezGene:8075321	UniProt:A0A1W0VXH9	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:OQU86823
ProteinID:OQU86823	ProteinID:OQU86823.1	PFscan:PS50005	PFscan:PS50293	EnsemblPlantsGene:SORBI_3003G157400	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0009DC8521	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:17592653..17595283

Molecular Weight (calculated)

32899.0 Da

IEP (calculated)

7.335

GRAVY (calculated)

-0.176

Length

298 amino acids

Sequence
(BLAST)

001: MVCIQYTLFF PPTNKSRSFP FKMAPAFLTT LHPATTSFRF PAGAGGWSRP HWAPLAAPTT LSPAATPAVP RRLLLPVPVA AGIWDLISGG AGGASLAVRR
101: GMQLFRQGDV AGSLAEFDKA IEMDPRQKQC TSSYLLLSFQ IFGNGASHYT TYTESYLFKQ RFEEGAEQFR IDVAANPNDT EESIWCFLCE AQLYGIEEAR
201: KRFLEVGLDS RPVMREAYAL FRDGGDPEKL VANFSSGSDG EIFYSSLYTG LYYESQKDGD MAKSRIVAAC KSPYGSRSGD YMASLAFVHC QCRNWNLA

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.