Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G354500.1 | Wheat | plastid | 81.0 | 92.05 |
| TraesCS1B01G367300.2 | Wheat | plastid | 81.0 | 92.05 |
| Os01t0343500-01 | Rice | plastid | 27.33 | 71.3 |
| Zm00001d009189_P001 | Maize | plastid | 45.67 | 62.84 |
| GSMUA_Achr8P06550_001 | Banana | plastid | 49.0 | 60.0 |
| OQU86823 | Sorghum | plastid | 59.0 | 59.4 |
| AT3G05625.1 | Thale cress | plastid | 48.33 | 56.42 |
| KRH33866 | Soybean | plastid | 47.0 | 55.29 |
| CDY67876 | Canola | plastid | 47.0 | 54.23 |
| Solyc10g044710.1.1 | Tomato | plastid | 45.0 | 54.22 |
| CDX74136 | Canola | plastid | 46.67 | 54.05 |
| Bra001158.1-P | Field mustard | plastid | 46.0 | 53.08 |
| PGSC0003DMT400094170 | Potato | cytosol, mitochondrion, nucleus | 23.67 | 43.29 |
| VIT_14s0060g02060.t01 | Wine grape | plastid | 46.67 | 29.41 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G356000.3 | EnsemblPlantsGene:TraesCS1D01G356000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | PFscan:PS50005 |
| PFscan:PS50293 | SEG:seg | SUPFAM:SSF48452 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1D:-:440409253..440411405
Molecular Weight (calculated)
32644.5 Da
IEP (calculated)
7.123
GRAVY (calculated)
-0.203
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSSFLRS PASFQPATGA CGHVRWAQPL APPKPHRSPL PPAATPGVPR RLLLPAAAGI WDFLSGGAAG AAAAPLAVRR GMQLFQQGDV AGSVAEFDRA
101: IELDPRQKAC TSLAEGAVAV LPRQVHNPMS NQAPDICNCN YPTHRWVSVF FHFRTLAYYI YRFEDAAEQF RLDVAANPND TEESIWCFLS EAQLYGVDGA
201: RNRFLEVGLD RRPVMREAYA LFKDGGDPEK LASNFSSSSG GELFYASLYA GLYYESQKDA DLAKSHIVAA CKTPYGSRSG DYMASLAVVH CQCRNWTLEG
101: IELDPRQKAC TSLAEGAVAV LPRQVHNPMS NQAPDICNCN YPTHRWVSVF FHFRTLAYYI YRFEDAAEQF RLDVAANPND TEESIWCFLS EAQLYGVDGA
201: RNRFLEVGLD RRPVMREAYA LFKDGGDPEK LASNFSSSSG GELFYASLYA GLYYESQKDA DLAKSHIVAA CKTPYGSRSG DYMASLAVVH CQCRNWTLEG
001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
Arabidopsis Description
At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.