Factsheet for TraesCS1A01G354500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G271000.1
TraesCS4A01G466700.1
TraesCS4B01G043100.1
TraesCS4D01G040400.1
TraesCS6A01G274500.1
TraesCS6B01G302000.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	TraesCS4A01G271000.1	AT1G14920.1	21798944
AT3G05625.1	TraesCS4A01G466700.1	AT1G14920.1	21798944
AT3G05625.1	TraesCS4B01G043100.1	AT1G14920.1	21798944
AT3G05625.1	TraesCS4D01G040400.1	AT1G14920.1	21798944
AT3G05625.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT3G05625.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT3G05625.1	TraesCS6D01G254800.1	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G367300.2	Wheat	plastid	96.21	96.21
TraesCS1D01G356000.3	Wheat	plastid	92.05	81.0
Os01t0343500-01	Rice	plastid	31.06	71.3
Zm00001d009189_P001	Maize	plastid	55.3	66.97
GSMUA_Achr8P06550_001	Banana	plastid	58.71	63.27
OQU86823	Sorghum	plastid	67.8	60.07
AT3G05625.1	Thale cress	plastid	57.95	59.53
KRH33866	Soybean	plastid	57.2	59.22
Solyc10g044710.1.1	Tomato	plastid	55.68	59.04
CDY67876	Canola	plastid	57.2	58.08
CDX74136	Canola	plastid	56.44	57.53
Bra001158.1-P	Field mustard	plastid	56.06	56.92
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	28.03	45.12
VIT_14s0060g02060.t01	Wine grape	plastid	56.82	31.51

Protein Annotations

EnsemblPlants:TraesCS1A01G354500.1	EnsemblPlantsGene:TraesCS1A01G354500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
PFscan:PS50005	PFscan:PS50293	SEG:seg	SUPFAM:SSF48452	MapMan:35.2	:

Description

No Description!

Coordinates

chr1A:+:537530821..537533259

Molecular Weight (calculated)

28722.9 Da

IEP (calculated)

6.663

GRAVY (calculated)

-0.256

Length

264 amino acids

Sequence
(BLAST)

001: MASTSSFLRS PASFQPATGA CGHVRWAQPL APPKPHRSPH PPAATPGVPR RLLLPAAAGI WDFLSGGAAG AAGAAAAPLA VRRGMQLFQQ GDVAGSVAEF
101: DRAIELDPRQ KAYLWQRGLS LYYLDRFEEA AEQFRLDVAA NPNDTEESIW CFLCEAQLYG VEEARKRFLE VGLDRRPVMR EAYALFKDGG DPEKLASNFS
201: TSPGGELFYA SLYAGLYYES QKDADLAKSH IVAACKTPYG SRSGDYMASL AVVHCQCRNW TLEG

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.