CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX86457
CDY58518

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G05625.1	CDX86457	AT3G27960.1	21798944
AT3G05625.1	CDY58518	AT3G27960.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74136	Canola	plastid	96.54	96.91
AT3G05625.1	Thale cress	plastid	88.85	89.88
GSMUA_Achr8P06550_001	Banana	plastid	60.0	63.67
Solyc10g044710.1.1	Tomato	plastid	60.77	63.45
KRH33866	Soybean	plastid	59.23	60.39
TraesCS1A01G354500.1	Wheat	plastid	58.08	57.2
TraesCS1B01G367300.2	Wheat	plastid	56.92	56.06
Zm00001d009189_P001	Maize	plastid	45.77	54.59
OQU86823	Sorghum	plastid	54.62	47.65
TraesCS1D01G356000.3	Wheat	plastid	54.23	47.0
PGSC0003DMT400094170	Potato	cytosol, mitochondrion, nucleus	28.85	45.73
Os01t0343500-01	Rice	plastid	15.38	34.78
VIT_14s0060g02060.t01	Wine grape	plastid	62.69	34.24

Protein Annotations

EnsemblPlants:CDY67876	EnsemblPlantsGene:GSBRNA2T00067602001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PFscan:PS50293	ProteinID:CDY67876
ProteinID:CDY67876.1	SUPFAM:SSF48452	UniParc:UPI0004EDCB9A	UniProt:A0A078JQD0	MapMan:35.2	:

Description

BnaAnng25460DBnaAnng25460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JQD0]

Coordinates

chrLK036604:+:4758..6405

Molecular Weight (calculated)

29152.5 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.357

Length

260 amino acids

Sequence
(BLAST)

001: MALTHIVNPI IYPSPTIPRR FAAISPLKTL NPQFSRHTPQ HAHALSRRLF LPSVSSIWDA ITGGGDSNPR EAIAAIRNGM QLFRQGDVSG SVTEFDKAIV
101: LDSRQKAYLW QRGLSLYYMD RFEEGAEQFR LDVAQNPNDT EESIWCFLCE ARLHGVDVAR KQFLEVGRDS RPVMREAYNL FKNGGDPEKL VNDFSSGQAS
201: EVFYASLYAG LYYEAEGKSE KAKFHITAAC GSPYGQRSDD YMASLAKVHC LCRNWSSGLV

Best Arabidopsis Sequence Match ( AT3G05625.1 )
(BLAST)

001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL

Arabidopsis Description

At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.