Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 1
- cytosol 1
- mitochondrion 2
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400001405 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G05625.1 | PGSC0003DMT400001405 | AT3G27960.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g044710.1.1 | Tomato | plastid | 60.37 | 39.76 |
| KRH33866 | Soybean | plastid | 50.61 | 32.55 |
| CDX74136 | Canola | plastid | 46.34 | 29.34 |
| Bra001158.1-P | Field mustard | plastid | 46.34 | 29.23 |
| CDY67876 | Canola | plastid | 45.73 | 28.85 |
| AT3G05625.1 | Thale cress | plastid | 45.12 | 28.79 |
| GSMUA_Achr8P06550_001 | Banana | plastid | 42.68 | 28.57 |
| TraesCS1A01G354500.1 | Wheat | plastid | 45.12 | 28.03 |
| TraesCS1B01G367300.2 | Wheat | plastid | 44.51 | 27.65 |
| OQU86823 | Sorghum | plastid | 48.78 | 26.85 |
| TraesCS1D01G356000.3 | Wheat | plastid | 43.29 | 23.67 |
| Zm00001d009189_P001 | Maize | plastid | 25.61 | 19.27 |
| VIT_14s0060g02060.t01 | Wine grape | plastid | 51.22 | 17.65 |
| Os01t0343500-01 | Rice | plastid | 6.1 | 8.7 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400094170 | EnsemblPlantsGene:PGSC0003DMG400043741 | PGSC:PGSC0003DMG400043741 | UniParc:UPI000294EA19 | UniProt:M1DTK1 | MapMan:35.2 |
Description
TPR repeat [Source:PGSC_GENE;Acc:PGSC0003DMG400043741]
Coordinates
chr10:-:32089221..32092539
Molecular Weight (calculated)
19131.5 Da
IEP (calculated)
5.124
GRAVY (calculated)
-0.587
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MVADSREKMS KFVSGVSEML VKECRTTILI KEIDIFRVMI HAQQIEEDKL KKKSREAKRA RTGDDDFLHS RYEEGAHQFR IDVAQNPNDT EESIWCFLCE
101: AQLYGIHEAR KRYLELVAAF LSGQPNEYFY ASLYDDLYYE SQNEPDEAKV HLIAACQSPY GSRF
101: AQLYGIHEAR KRYLELVAAF LSGQPNEYFY ASLYDDLYYE SQNEPDEAKV HLIAACQSPY GSRF
001: MSLTQIVNPI IYPSRTIPRR FTAISPFKTL SPQFSRHPPH ALSRRLFLPS VSSIWDAITG GGDSNPREAI AAVRRGMQLF RQGDVAGSVA EFDRAIILDP
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
101: RQKAYLWQRG LSLYYVDRFE EGAEQFRIDV AQNPNDTEES IWCFICEARL HGVDVARTQF LEVGRDSRPV MREAYNLFKN GGDPEKLVND FSSGQASEYF
201: YASLYAGLYY EAEGKSENAK FHLTAACGSP YGQRSDDYMA SLAKVHCLCR NWSSGIL
Arabidopsis Description
At3g05625 [Source:UniProtKB/TrEMBL;Acc:Q8GUK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.