Factsheet for Solyc05g055230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
unclear: 26455813
extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113740.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Solyc03g113740.2.1	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060127	Potato	extracellular	98.61	98.61
Solyc11g006690.1.1	Tomato	nucleus	97.92	97.92
CDY47259	Canola	cytosol	82.64	86.86
Bra005887.1-P	Field mustard	cytosol	81.94	86.13
VIT_13s0073g00120.t01	Wine grape	cytosol	85.42	85.42
CDX80997	Canola	cytosol	81.25	85.4
KRH50389	Soybean	cytosol	75.0	84.38
CDY04927	Canola	cytosol	79.17	83.82
KRH32794	Soybean	cytosol	80.56	83.45
KRH72240	Soybean	endoplasmic reticulum	80.56	82.86
KRG89343	Soybean	nucleus	76.39	81.48
Bra002983.1-P	Field mustard	cytosol	63.89	81.42
CDY19565	Canola	cytosol	63.89	81.42
CDY25845	Canola	cytosol	63.89	81.42
CDY48004	Canola	cytosol	63.89	81.42
Bra009431.1-P	Field mustard	cytosol	76.39	80.88
CDX70203	Canola	cytosol	76.39	80.88
CDY44878	Canola	cytosol	76.39	80.88
GSMUA_Achr11P...	Banana	cytosol	79.17	80.85
CDY00960	Canola	cytosol	77.78	80.58
AT2G04390.1	Thale cress	cytosol	78.47	80.14
VIT_08s0007g02620.t01	Wine grape	cytosol	78.47	80.14
CDY11309	Canola	cytosol	75.0	80.0
Bra005820.1-P	Field mustard	cytosol	75.0	80.0
AT5G04800.2	Thale cress	cytosol	77.78	79.43
AT2G05220.1	Thale cress	cytosol	77.08	79.29
GSMUA_Achr8P12400_001	Banana	cytosol	77.08	78.17
GSMUA_Achr1P00810_001	Banana	nucleus	78.47	77.93
AT3G10610.1	Thale cress	cytosol	75.69	77.86
Os03t0109500-00	Rice	plasma membrane	72.22	72.22
Zm00001d045000_P001	Maize	mitochondrion	70.83	71.83
EER88019	Sorghum	cytosol	69.44	70.42
Zm00001d037111_P001	Maize	plastid	69.44	70.42
Os10t0411800-01	Rice	nucleus	68.75	70.21
TraesCS1A01G159100.1	Wheat	nucleus	68.06	68.53
TraesCS1D01G156400.2	Wheat	golgi	68.06	68.53
TraesCS1B01G174800.1	Wheat	golgi, unclear	67.36	67.83
GSMUA_Achr4P29180_001	Banana	mitochondrion	77.08	66.07
Bra028778.1-P	Field mustard	cytosol	79.17	63.69
KRH30810	Soybean	cytosol, endoplasmic reticulum	38.89	63.64
CDY14138	Canola	nucleus	80.56	62.7
HORVU1Hr1G042220.1	Barley	nucleus	68.06	55.68

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EMBL:AF161704	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:IPR036401	HAMAP:MF_00511
UniProt:P49215	PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf
InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	EnsemblPlantsGene:Solyc05g055230.1	EnsemblPlants:Solyc05g055230.1.1	UniParc:UPI000016D9A3
EMBL:X83421	SEG:seg	:	:	:	:

Description

RPS1740S ribosomal protein S17 [Source:UniProtKB/Swiss-Prot;Acc:P49215]

Coordinates

chr5:-:64965602..64966036

Molecular Weight (calculated)

16222.9 Da

IEP (calculated)

10.601

GRAVY (calculated)

-0.531

Length

144 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERY YSKMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDLIEVDK
101: ETLDMLSALG MSDLPGVVKQ AAEPQAVAAL PSYGRGGGGF GRKY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.