CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	KRH24006	AT3G48150.1	21798944
AT2G04390.1	KRH27971	AT3G48150.1	21798944
AT2G04390.1	KRH29310	AT3G48150.1	21798944
AT2G04390.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89343	Soybean	nucleus	96.09	91.11
KRH72240	Soybean	endoplasmic reticulum	87.5	80.0
KRH32794	Soybean	cytosol	86.72	79.86
CDY47259	Canola	cytosol	85.16	79.56
Bra005887.1-P	Field mustard	cytosol	85.16	79.56
KRH30810	Soybean	cytosol, endoplasmic reticulum	54.69	79.55
CDY04927	Canola	cytosol	84.38	79.41
CDX80997	Canola	cytosol	84.38	78.83
CDY48004	Canola	cytosol	69.53	78.76
CDY25845	Canola	cytosol	69.53	78.76
CDY19565	Canola	cytosol	69.53	78.76
Bra002983.1-P	Field mustard	cytosol	69.53	78.76
VIT_08s0007g02620.t01	Wine grape	cytosol	86.72	78.72
CDY11309	Canola	cytosol	82.81	78.52
Bra005820.1-P	Field mustard	cytosol	82.81	78.52
CDX70203	Canola	cytosol	82.81	77.94
Bra009431.1-P	Field mustard	cytosol	82.81	77.94
CDY44878	Canola	cytosol	82.81	77.94
AT5G04800.2	Thale cress	cytosol	85.16	77.31
AT2G05220.1	Thale cress	cytosol	84.38	77.14
AT2G04390.1	Thale cress	cytosol	84.38	76.6
AT3G10610.1	Thale cress	cytosol	83.59	76.43
CDY00960	Canola	cytosol	82.81	76.26
Solyc11g006690.1.1	Tomato	nucleus	85.16	75.69
Solyc05g055230.1.1	Tomato	nucleus	84.38	75.0
Os03t0109500-00	Rice	plasma membrane	78.12	69.44
PGSC0003DMT400072583	Potato	cytosol	80.47	68.21
GSMUA_Achr5P10190_001	Banana	cytosol	25.0	66.67
Os10t0411800-01	Rice	nucleus	73.44	66.67
Zm00001d045000_P001	Maize	mitochondrion	73.44	66.2
TraesCS1A01G159100.1	Wheat	nucleus	73.44	65.73
TraesCS1B01G174800.1	Wheat	golgi, unclear	73.44	65.73
TraesCS1D01G156400.2	Wheat	golgi	73.44	65.73
EER88019	Sorghum	cytosol	72.66	65.49
Zm00001d037111_P001	Maize	plastid	72.66	65.49
Bra028778.1-P	Field mustard	cytosol	82.81	59.22
CDY14138	Canola	nucleus	82.81	57.3
HORVU1Hr1G042220.1	Barley	nucleus	72.66	52.84

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EMBL:ACUP02004690	EnsemblPlantsGene:GLYMA_07G219500	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036401	UniProt:K7L353	EnsemblPlants:KRH50389	ProteinID:KRH50389	ProteinID:KRH50389.1	HAMAP:MF_00511
PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e
InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI000296FB8B	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:39322083..39322999

Molecular Weight (calculated)

15015.3 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.692

Length

128 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERH YSRMTLDFHT NKKLLEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDVSA INTDHIEVDK
101: ETLDMLHSLG INDIPGITQQ NFPFTRRY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.