Factsheet for Os10t0411800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
nucleus: 23777608
extracellular: 24083427
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os06t0679100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Os02t0656300-01	AT3G48150.1	21798944
AT2G04390.1	Os06t0679100-00	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88019	Sorghum	cytosol	94.33	93.66
Zm00001d037111_P001	Maize	plastid	93.62	92.96
Zm00001d045000_P001	Maize	mitochondrion	92.91	92.25
TraesCS1B01G174800.1	Wheat	golgi, unclear	85.82	84.62
TraesCS1D01G156400.2	Wheat	golgi	85.11	83.92
TraesCS1A01G159100.1	Wheat	nucleus	85.11	83.92
Os03t0109500-00	Rice	plasma membrane	82.98	81.25
Bra005820.1-P	Field mustard	cytosol	72.34	75.56
CDY11309	Canola	cytosol	72.34	75.56
CDY47259	Canola	cytosol	73.05	75.18
CDX80997	Canola	cytosol	73.05	75.18
GSMUA_Achr11P...	Banana	cytosol	75.18	75.18
CDY04927	Canola	cytosol	72.34	75.0
Bra005887.1-P	Field mustard	cytosol	72.34	74.45
KRH50389	Soybean	cytosol	66.67	73.44
CDY44878	Canola	cytosol	70.21	72.79
CDX70203	Canola	cytosol	70.21	72.79
Bra009431.1-P	Field mustard	cytosol	70.21	72.79
GSMUA_Achr8P12400_001	Banana	cytosol	73.05	72.54
AT5G04800.2	Thale cress	cytosol	72.34	72.34
KRH32794	Soybean	cytosol	70.92	71.94
GSMUA_Achr1P00810_001	Banana	nucleus	73.76	71.72
VIT_08s0007g02620.t01	Wine grape	cytosol	71.63	71.63
AT2G04390.1	Thale cress	cytosol	71.63	71.63
AT2G05220.1	Thale cress	cytosol	70.92	71.43
CDY00960	Canola	cytosol	70.21	71.22
CDY48004	Canola	cytosol	56.74	70.8
Bra002983.1-P	Field mustard	cytosol	56.74	70.8
CDY25845	Canola	cytosol	56.74	70.8
CDY19565	Canola	cytosol	56.74	70.8
KRH72240	Soybean	endoplasmic reticulum	70.21	70.71
KRG89343	Soybean	nucleus	67.38	70.37
AT3G10610.1	Thale cress	cytosol	69.5	70.0
HORVU1Hr1G042220.1	Barley	nucleus	87.23	69.89
PGSC0003DMT400060127	Potato	extracellular	70.21	68.75
Solyc05g055230.1.1	Tomato	nucleus	70.21	68.75
VIT_13s0073g00120.t01	Wine grape	cytosol	70.21	68.75
Solyc11g006690.1.1	Tomato	nucleus	69.5	68.06
PGSC0003DMT400019655	Potato	nucleus	68.79	67.36
GSMUA_Achr4P29180_001	Banana	mitochondrion	74.47	62.5
Bra028778.1-P	Field mustard	cytosol	71.63	56.42
CDY14138	Canola	nucleus	71.63	54.59
KRH30810	Soybean	cytosol, endoplasmic reticulum	33.33	53.41

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EntrezGene:4348608	ProteinID:AAP53735.1	ProteinID:BAF26499.1	ProteinID:BAT10817.1
GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627
InterPro:IPR036401	HAMAP:MF_00511	EnsemblPlantsGene:Os10g0411800	EnsemblPlants:Os10t0411800-01	PFAM:PF00833	PANTHER:PTHR10732
PANTHER:PTHR10732:SF2	UniProt:Q7XEQ3	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	SUPFAM:SSF116820	UniParc:UPI00001A3B97
RefSeq:XP_015614780.1	:	:	:	:	:

Description

Similar to 40S ribosomal protein S17-3. (Os10t0411800-01)

Coordinates

chr10:+:14330689..14331424

Molecular Weight (calculated)

16430.1 Da

IEP (calculated)

10.776

GRAVY (calculated)

-0.793

Length

141 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LPSKRLRNKV AGFTTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVEEIRVDK
101: ETMEMLAALG MADLPGVERQ QEVSAPTYSR PPYGGPRRDR V

Best Arabidopsis Sequence Match ( AT3G10610.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR

Arabidopsis Description

RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.