Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 83.45 | 85.82 |
| GSMUA_Achr8P12400_001 | Banana | cytosol | 80.69 | 82.39 |
| PGSC0003DMT400019655 | Potato | nucleus | 78.62 | 79.17 |
| PGSC0003DMT400060127 | Potato | extracellular | 77.93 | 78.47 |
| Solyc05g055230.1.1 | Tomato | nucleus | 77.93 | 78.47 |
| Solyc11g006690.1.1 | Tomato | nucleus | 77.93 | 78.47 |
| Zm00001d045000_P001 | Maize | mitochondrion | 74.48 | 76.06 |
| EER88019 | Sorghum | cytosol | 73.1 | 74.65 |
| Zm00001d037111_P001 | Maize | plastid | 73.1 | 74.65 |
| Os03t0109500-00 | Rice | plasma membrane | 73.79 | 74.31 |
| Os10t0411800-01 | Rice | nucleus | 71.72 | 73.76 |
| GSMUA_Achr4P29180_001 | Banana | mitochondrion | 84.83 | 73.21 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 71.72 | 72.73 |
| TraesCS1D01G156400.2 | Wheat | golgi | 71.03 | 72.03 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 70.34 | 71.33 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 22.76 | 68.75 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 71.03 | 58.52 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr1G00810_001 | EnsemblPlants:GSMUA_Achr1P00810_001 |
| EnsemblPlants:GSMUA_Achr1T00810_001 | InterPro:IPR036401 | UniProt:M0RVY9 | HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 |
| PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 |
| UniParc:UPI0002953099 | : | : | : | : | : |
Description
40S ribosomal protein S17 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00810_001]
Coordinates
chr1:+:626834..629692
Molecular Weight (calculated)
16533.0 Da
IEP (calculated)
10.491
GRAVY (calculated)
-0.750
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIERY YSRMTLDFHT NKKMLEEVAI IPSKRLRNKI AGFSTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPDESA IKVDHIEVDK
101: DTVDMLASLG MTDIPGVEQQ ADAPAAPTYP YQSRPGGGYG AGRRN
101: DTVDMLASLG MTDIPGVEQQ ADAPAAPTYP YQSRPGGGYG AGRRN
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
Arabidopsis Description
RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.