Factsheet for Zm00001d045000_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Zm00001d017475_P002	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88019	Sorghum	cytosol	98.59	98.59
Zm00001d037111_P001	Maize	plastid	97.89	97.89
Os10t0411800-01	Rice	nucleus	92.25	92.91
TraesCS1D01G156400.2	Wheat	golgi	85.21	84.62
TraesCS1B01G174800.1	Wheat	golgi, unclear	85.21	84.62
TraesCS1A01G159100.1	Wheat	nucleus	85.21	84.62
CDX80997	Canola	cytosol	73.94	76.64
CDY47259	Canola	cytosol	73.94	76.64
Bra005887.1-P	Field mustard	cytosol	73.24	75.91
Bra009431.1-P	Field mustard	cytosol	72.54	75.74
CDX70203	Canola	cytosol	72.54	75.74
CDY44878	Canola	cytosol	72.54	75.74
CDY04927	Canola	cytosol	71.83	75.0
GSMUA_Achr1P00810_001	Banana	nucleus	76.06	74.48
GSMUA_Achr11P...	Banana	cytosol	73.94	74.47
KRH50389	Soybean	cytosol	66.2	73.44
KRH32794	Soybean	cytosol	71.13	72.66
VIT_08s0007g02620.t01	Wine grape	cytosol	71.83	72.34
CDY11309	Canola	cytosol	68.31	71.85
Bra005820.1-P	Field mustard	cytosol	68.31	71.85
GSMUA_Achr8P12400_001	Banana	cytosol	71.83	71.83
CDY25845	Canola	cytosol	57.04	71.68
Bra002983.1-P	Field mustard	cytosol	57.04	71.68
CDY19565	Canola	cytosol	57.04	71.68
CDY48004	Canola	cytosol	57.04	71.68
AT2G04390.1	Thale cress	cytosol	71.13	71.63
AT5G04800.2	Thale cress	cytosol	71.13	71.63
KRH72240	Soybean	endoplasmic reticulum	70.42	71.43
KRG89343	Soybean	nucleus	67.61	71.11
VIT_13s0073g00120.t01	Wine grape	cytosol	71.83	70.83
PGSC0003DMT400060127	Potato	extracellular	71.83	70.83
Solyc05g055230.1.1	Tomato	nucleus	71.83	70.83
AT2G05220.1	Thale cress	cytosol	69.72	70.71
Solyc11g006690.1.1	Tomato	nucleus	71.13	70.14
AT3G10610.1	Thale cress	cytosol	69.01	70.0
CDY00960	Canola	cytosol	68.31	69.78
PGSC0003DMT400019655	Potato	nucleus	70.42	69.44
HORVU1Hr1G042220.1	Barley	nucleus	85.92	69.32
GSMUA_Achr4P29180_001	Banana	mitochondrion	76.06	64.29
Bra028778.1-P	Field mustard	cytosol	71.13	56.42
CDY14138	Canola	nucleus	73.24	56.22
KRH30810	Soybean	cytosol, endoplasmic reticulum	33.8	54.55

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	ProteinID:AQL01293.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036401
UniProt:K7VDJ2	HAMAP:MF_00511	PFAM:PF00833	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf
InterPro:Ribosomal_S17e	SUPFAM:SSF116820	UniParc:UPI000220B660	EnsemblPlantsGene:Zm00001d045000	EnsemblPlants:Zm00001d045000_P001	EnsemblPlants:Zm00001d045000_T001

Description

40S ribosomal protein S17-4

Coordinates

chr9:-:9718247..9718675

Molecular Weight (calculated)

16444.1 Da

IEP (calculated)

10.776

GRAVY (calculated)

-0.768

Length

142 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LPSKRLRNKV AGFSTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVEEIRVDK
101: ETMEMLAALG MADLPGVERQ AEVSNAPAYG RPQYGGPRRD RV

Best Arabidopsis Sequence Match ( AT3G10610.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR

Arabidopsis Description

RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.