Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 4
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47259 | Canola | cytosol | 99.27 | 99.27 |
| Bra009431.1-P | Field mustard | cytosol | 86.86 | 87.5 |
| Bra005820.1-P | Field mustard | cytosol | 85.4 | 86.67 |
| KRH32794 | Soybean | cytosol | 86.86 | 85.61 |
| KRH50389 | Soybean | cytosol | 79.56 | 85.16 |
| KRH72240 | Soybean | endoplasmic reticulum | 86.13 | 84.29 |
| KRG89343 | Soybean | nucleus | 82.48 | 83.7 |
| Bra002983.1-P | Field mustard | cytosol | 68.61 | 83.19 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 85.4 | 82.98 |
| Solyc11g006690.1.1 | Tomato | nucleus | 86.86 | 82.64 |
| Solyc05g055230.1.1 | Tomato | nucleus | 86.13 | 81.94 |
| PGSC0003DMT400072583 | Potato | cytosol | 82.48 | 74.83 |
| Os03t0109500-00 | Rice | plasma membrane | 77.37 | 73.61 |
| Zm00001d045000_P001 | Maize | mitochondrion | 75.91 | 73.24 |
| EER88019 | Sorghum | cytosol | 75.18 | 72.54 |
| Os10t0411800-01 | Rice | nucleus | 74.45 | 72.34 |
| Zm00001d037111_P001 | Maize | plastid | 74.45 | 71.83 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 72.99 | 69.93 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 72.99 | 69.93 |
| TraesCS1D01G156400.2 | Wheat | golgi | 72.99 | 69.93 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 24.09 | 68.75 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 43.8 | 68.18 |
| Bra028778.1-P | Field mustard | cytosol | 86.86 | 66.48 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 72.99 | 56.82 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | EnsemblPlantsGene:Bra005887 | EnsemblPlants:Bra005887.1 | EnsemblPlants:Bra005887.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR036401 | UniProt:M4CNU9 | HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 |
| PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 |
| UniParc:UPI000253F5E5 | : | : | : | : | : |
Description
AT5G04800 (E=4e-063) | 40S ribosomal protein S17 (RPS17D)
Coordinates
chrA03:+:1070700..1071113
Molecular Weight (calculated)
15632.3 Da
IEP (calculated)
10.912
GRAVY (calculated)
-0.526
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDRIEVDK
101: ETLDMLASLG MGDMPGVVKV EPVSAAPIAG FGRGRRF
101: ETLDMLASLG MGDMPGVVKV EPVSAAPIAG FGRGRRF
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
Arabidopsis Description
RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.