CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005887.1-P	Field mustard	cytosol	99.27	99.27
CDX80997	Canola	cytosol	98.54	98.54
CDY04927	Canola	cytosol	87.59	88.24
CDX70203	Canola	cytosol	86.86	87.5
CDY44878	Canola	cytosol	86.86	87.5
CDY11309	Canola	cytosol	85.4	86.67
CDY00960	Canola	cytosol	86.86	85.61
KRH32794	Soybean	cytosol	86.86	85.61
KRH50389	Soybean	cytosol	79.56	85.16
KRH72240	Soybean	endoplasmic reticulum	86.13	84.29
KRG89343	Soybean	nucleus	82.48	83.7
VIT_08s0007g02620.t01	Wine grape	cytosol	86.13	83.69
Solyc11g006690.1.1	Tomato	nucleus	87.59	83.33
CDY48004	Canola	cytosol	68.61	83.19
CDY25845	Canola	cytosol	68.61	83.19
CDY19565	Canola	cytosol	68.61	83.19
Solyc05g055230.1.1	Tomato	nucleus	86.86	82.64
PGSC0003DMT400072583	Potato	cytosol	83.21	75.5
Os03t0109500-00	Rice	plasma membrane	78.1	74.31
Zm00001d045000_P001	Maize	mitochondrion	76.64	73.94
EER88019	Sorghum	cytosol	75.91	73.24
Os10t0411800-01	Rice	nucleus	75.18	73.05
Zm00001d037111_P001	Maize	plastid	75.18	72.54
TraesCS1A01G159100.1	Wheat	nucleus	73.72	70.63
TraesCS1B01G174800.1	Wheat	golgi, unclear	73.72	70.63
TraesCS1D01G156400.2	Wheat	golgi	73.72	70.63
GSMUA_Achr5P10190_001	Banana	cytosol	24.09	68.75
KRH30810	Soybean	cytosol, endoplasmic reticulum	43.8	68.18
CDY14138	Canola	nucleus	88.32	65.41
HORVU1Hr1G042220.1	Barley	nucleus	73.72	57.39

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:A0A078ID34	UniProt:A0A078ID34	EnsemblPlants:CDY47259	ProteinID:CDY47259
ProteinID:CDY47259.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00086984001	InterPro:IPR036401	HAMAP:MF_00511
PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e
InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI0001B8377B	:	:	:

Description

BnaA02g29450DBnaA02g29450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ID34]

Coordinates

chrLK032704:-:170420..171120

Molecular Weight (calculated)

15614.3 Da

IEP (calculated)

10.912

GRAVY (calculated)

-0.512

Length

137 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDRIEVDK
101: ETLDMLASLG MGDLPGVVKV EPVSAAPIAG FGRGRRF

Best Arabidopsis Sequence Match ( AT2G05220.2 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY

Arabidopsis Description

RPS17B40S ribosomal protein S17-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.