Factsheet for Zm00001d037111_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Zm00001d017475_P002	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045000_P001	Maize	mitochondrion	97.89	97.89
EER88019	Sorghum	cytosol	97.89	97.89
Os10t0411800-01	Rice	nucleus	92.96	93.62
TraesCS1B01G174800.1	Wheat	golgi, unclear	86.62	86.01
TraesCS1D01G156400.2	Wheat	golgi	85.92	85.31
TraesCS1A01G159100.1	Wheat	nucleus	85.92	85.31
CDX80997	Canola	cytosol	72.54	75.18
CDY47259	Canola	cytosol	72.54	75.18
Bra005887.1-P	Field mustard	cytosol	71.83	74.45
Bra009431.1-P	Field mustard	cytosol	71.13	74.26
CDX70203	Canola	cytosol	71.13	74.26
CDY04927	Canola	cytosol	71.13	74.26
CDY44878	Canola	cytosol	71.13	74.26
GSMUA_Achr11P...	Banana	cytosol	73.24	73.76
GSMUA_Achr1P00810_001	Banana	nucleus	74.65	73.1
KRH50389	Soybean	cytosol	65.49	72.66
KRH32794	Soybean	cytosol	70.42	71.94
VIT_08s0007g02620.t01	Wine grape	cytosol	71.13	71.63
GSMUA_Achr8P12400_001	Banana	cytosol	71.13	71.13
CDY11309	Canola	cytosol	67.61	71.11
Bra005820.1-P	Field mustard	cytosol	67.61	71.11
AT5G04800.2	Thale cress	cytosol	70.42	70.92
AT2G04390.1	Thale cress	cytosol	70.42	70.92
CDY19565	Canola	cytosol	56.34	70.8
Bra002983.1-P	Field mustard	cytosol	56.34	70.8
CDY25845	Canola	cytosol	56.34	70.8
CDY48004	Canola	cytosol	56.34	70.8
KRH72240	Soybean	endoplasmic reticulum	69.72	70.71
KRG89343	Soybean	nucleus	66.9	70.37
AT2G05220.1	Thale cress	cytosol	69.01	70.0
HORVU1Hr1G042220.1	Barley	nucleus	86.62	69.89
CDY00960	Canola	cytosol	68.31	69.78
PGSC0003DMT400060127	Potato	extracellular	70.42	69.44
Solyc05g055230.1.1	Tomato	nucleus	70.42	69.44
VIT_13s0073g00120.t01	Wine grape	cytosol	70.42	69.44
AT3G10610.1	Thale cress	cytosol	68.31	69.29
Solyc11g006690.1.1	Tomato	nucleus	69.72	68.75
PGSC0003DMT400019655	Potato	nucleus	69.01	68.06
GSMUA_Achr4P29180_001	Banana	mitochondrion	75.35	63.69
Bra028778.1-P	Field mustard	cytosol	70.42	55.87
CDY14138	Canola	nucleus	71.83	55.14
KRH30810	Soybean	cytosol, endoplasmic reticulum	33.8	54.55

Protein Annotations

Gene3D:1.10.60.20	EntrezGene:100194345	MapMan:17.1.3.1.19	ProteinID:AQK83001.1	UniProt:B4FID1	EMBL:BT036869
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036401	HAMAP:MF_00511	PFAM:PF00833	PANTHER:PTHR10732
PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	SUPFAM:SSF116820	UniParc:UPI00017B71DA	EnsemblPlantsGene:Zm00001d037111
EnsemblPlants:Zm00001d037111_P001	EnsemblPlants:Zm00001d037111_T001	:	:	:	:

Description

40S ribosomal protein S17-1

Coordinates

chr6:+:112668246..112668674

Molecular Weight (calculated)

16459.1 Da

IEP (calculated)

10.776

GRAVY (calculated)

-0.732

Length

142 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LPSKRLRNKV AGFTTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPEKSA LEVEEIRVDK
101: ETMEMLAALG MADLPGVERQ AEVSSVPAYG RPQYGGPRRD RV

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.