Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G05220.1 | Thale cress | cytosol | 96.45 | 97.14 |
| AT5G04800.2 | Thale cress | cytosol | 95.74 | 95.74 |
| CDY04927 | Canola | cytosol | 88.65 | 91.91 |
| Bra005820.1-P | Field mustard | cytosol | 87.23 | 91.11 |
| CDY11309 | Canola | cytosol | 87.23 | 91.11 |
| Bra009431.1-P | Field mustard | cytosol | 85.82 | 88.97 |
| CDX70203 | Canola | cytosol | 85.82 | 88.97 |
| CDY44878 | Canola | cytosol | 85.82 | 88.97 |
| AT3G10610.1 | Thale cress | cytosol | 86.52 | 87.14 |
| KRH50389 | Soybean | cytosol | 76.6 | 84.38 |
| CDY19565 | Canola | cytosol | 67.38 | 84.07 |
| CDY48004 | Canola | cytosol | 67.38 | 84.07 |
| CDY25845 | Canola | cytosol | 67.38 | 84.07 |
| Bra002983.1-P | Field mustard | cytosol | 67.38 | 84.07 |
| KRG89343 | Soybean | nucleus | 80.14 | 83.7 |
| KRH32794 | Soybean | cytosol | 81.56 | 82.73 |
| KRH72240 | Soybean | endoplasmic reticulum | 81.56 | 82.14 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 79.43 | 79.43 |
| Solyc11g006690.1.1 | Tomato | nucleus | 80.85 | 79.17 |
| Solyc05g055230.1.1 | Tomato | nucleus | 80.14 | 78.47 |
| PGSC0003DMT400072583 | Potato | cytosol | 77.31 | 72.19 |
| Os10t0411800-01 | Rice | nucleus | 71.63 | 71.63 |
| Zm00001d045000_P001 | Maize | mitochondrion | 71.63 | 71.13 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 71.63 | 70.63 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 71.63 | 70.63 |
| TraesCS1D01G156400.2 | Wheat | golgi | 71.63 | 70.63 |
| EER88019 | Sorghum | cytosol | 70.92 | 70.42 |
| Zm00001d037111_P001 | Maize | plastid | 70.92 | 70.42 |
| Os03t0109500-00 | Rice | plasma membrane | 71.63 | 70.14 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 23.4 | 68.75 |
| Bra028778.1-P | Field mustard | cytosol | 86.52 | 68.16 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 41.84 | 67.05 |
| CDY14138 | Canola | nucleus | 87.94 | 67.03 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 71.63 | 57.39 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | EntrezGene:814978 | UniProt:A0A178VXS8 | ProteinID:AAD25839.1 | ProteinID:AEC05829.1 |
| EMBL:AF419568 | ArrayExpress:AT2G04390 | EnsemblPlantsGene:AT2G04390 | RefSeq:AT2G04390 | TAIR:AT2G04390 | RefSeq:AT2G04390-TAIR-G |
| EnsemblPlants:AT2G04390.1 | TAIR:AT2G04390.1 | EMBL:AY079105 | EMBL:AY088578 | GO:GO:0000028 | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0005886 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR036401 | HAMAP:MF_00511 | RefSeq:NP_178520.1 |
| ProteinID:OAP10065.1 | UniProt:P49205 | PFAM:PF00833 | PO:PO:0000293 | ScanProsite:PS00712 | PANTHER:PTHR10732 |
| PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 | UniParc:UPI0000001138 |
| EMBL:Z35178 | : | : | : | : | : |
Description
RPS17A40S ribosomal protein S17-1 [Source:UniProtKB/Swiss-Prot;Acc:P49205]
Coordinates
chr2:+:1526889..1528577
Molecular Weight (calculated)
16047.7 Da
IEP (calculated)
10.720
GRAVY (calculated)
-0.582
Length
141 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTLGISAV DPQQAMAPIP AFGGGRAPRR Y
101: ETLEMLASLG MSDTLGISAV DPQQAMAPIP AFGGGRAPRR Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.