Factsheet for Bra028778.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018081.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Bra018081.1-P	AT3G48150.1	21798944
AT2G04390.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04927	Canola	cytosol	74.3	97.79
Bra005820.1-P	Field mustard	cytosol	67.04	88.89
Bra009431.1-P	Field mustard	cytosol	66.48	87.5
AT5G04800.2	Thale cress	cytosol	68.72	87.23
AT2G05220.1	Thale cress	cytosol	68.16	87.14
Bra005887.1-P	Field mustard	cytosol	66.48	86.86
AT2G04390.1	Thale cress	cytosol	68.16	86.52
Bra002983.1-P	Field mustard	cytosol	53.07	84.07
KRH32794	Soybean	cytosol	64.8	83.45
KRH50389	Soybean	cytosol	59.22	82.81
KRH72240	Soybean	endoplasmic reticulum	64.25	82.14
KRG89343	Soybean	nucleus	61.45	81.48
VIT_08s0007g02620.t01	Wine grape	cytosol	63.69	80.85
Solyc11g006690.1.1	Tomato	nucleus	63.69	79.17
Solyc05g055230.1.1	Tomato	nucleus	63.69	79.17
PGSC0003DMT400072583	Potato	cytosol	61.45	72.85
Os10t0411800-01	Rice	nucleus	56.42	71.63
Zm00001d045000_P001	Maize	mitochondrion	56.42	71.13
Os03t0109500-00	Rice	plasma membrane	56.98	70.83
EER88019	Sorghum	cytosol	55.87	70.42
Zm00001d037111_P001	Maize	plastid	55.87	70.42
TraesCS1A01G159100.1	Wheat	nucleus	55.87	69.93
TraesCS1B01G174800.1	Wheat	golgi, unclear	55.87	69.93
TraesCS1D01G156400.2	Wheat	golgi	55.87	69.93
GSMUA_Achr5P10190_001	Banana	cytosol	18.44	68.75
KRH30810	Soybean	cytosol, endoplasmic reticulum	31.84	64.77
HORVU1Hr1G042220.1	Barley	nucleus	55.31	56.25

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EnsemblPlantsGene:Bra028778	EnsemblPlants:Bra028778.1	EnsemblPlants:Bra028778.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR036401	UniProt:M4EJ13	HAMAP:MF_00511	PFAM:PF00833	ScanProsite:PS00712
PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820
UniParc:UPI00025430AE	SEG:seg	:	:	:	:

Description

AT5G04800 (E=1e-063) | 40S ribosomal protein S17 (RPS17D)

Coordinates

chrA02:+:2096805..2097768

Molecular Weight (calculated)

20315.3 Da

IEP (calculated)

7.725

GRAVY (calculated)

-0.631

Length

179 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDVPGVSVV EPQAVAPSFG RPPRSACKIE GSSGVLTETF APDWSSHNHH RSSYLDQVFD VDPEEDVDE

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.