Factsheet for PGSC0003DMT400072583

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063189

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	PGSC0003DMT400063189	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47259	Canola	cytosol	75.5	83.21
Bra005887.1-P	Field mustard	cytosol	74.83	82.48
PGSC0003DMT400019655	Potato	nucleus	78.15	81.94
CDX80997	Canola	cytosol	74.17	81.75
VIT_13s0073g00120.t01	Wine grape	cytosol	77.48	81.25
PGSC0003DMT400060127	Potato	extracellular	77.48	81.25
CDY04927	Canola	cytosol	72.85	80.88
KRH32794	Soybean	cytosol	74.17	80.58
KRH50389	Soybean	cytosol	68.21	80.47
KRH72240	Soybean	endoplasmic reticulum	74.17	80.0
CDY19565	Canola	cytosol	59.6	79.65
CDY48004	Canola	cytosol	59.6	79.65
CDY25845	Canola	cytosol	59.6	79.65
Bra002983.1-P	Field mustard	cytosol	59.6	79.65
KRG89343	Soybean	nucleus	70.86	79.26
CDY44878	Canola	cytosol	70.86	78.68
CDX70203	Canola	cytosol	70.86	78.68
Bra009431.1-P	Field mustard	cytosol	70.86	78.68
VIT_08s0007g02620.t01	Wine grape	cytosol	72.85	78.01
AT5G04800.2	Thale cress	cytosol	72.85	78.01
CDY11309	Canola	cytosol	69.54	77.78
Bra005820.1-P	Field mustard	cytosol	69.54	77.78
CDY00960	Canola	cytosol	71.52	77.7
AT2G04390.1	Thale cress	cytosol	72.19	77.31
AT2G05220.1	Thale cress	cytosol	71.52	77.14
AT3G10610.1	Thale cress	cytosol	70.2	75.71
GSMUA_Achr5P10190_001	Banana	cytosol	21.85	68.75
Bra028778.1-P	Field mustard	cytosol	72.85	61.45
KRH30810	Soybean	cytosol, endoplasmic reticulum	35.76	61.36
CDY14138	Canola	nucleus	74.17	60.54

Protein Annotations

Gene3D:1.10.60.20	EntrezGene:102581235	MapMan:17.1.3.1.19	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036401
UniProt:M1CQL1	HAMAP:MF_00511	PFAM:PF00833	EnsemblPlantsGene:PGSC0003DMG400028243	PGSC:PGSC0003DMG400028243	EnsemblPlants:PGSC0003DMT400072583
ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS
SUPFAM:SSF116820	UniParc:UPI00029610DA	RefSeq:XP_006339153.1	SEG:seg	:	:

Description

40S ribosomal protein S17 [Source:PGSC_GENE;Acc:PGSC0003DMG400028243]

Coordinates

chr10:+:55946527..55947282

Molecular Weight (calculated)

16722.4 Da

IEP (calculated)

10.658

GRAVY (calculated)

-0.522

Length

151 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERY YSKMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA INTERIEVDK
101: ETIDLLASMG MSELPGVVLK EEQTVAIAGP VGGFGGGRGG FGGGRGGRGG Y

Best Arabidopsis Sequence Match ( AT2G04390.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTLGISAV DPQQAMAPIP AFGGGRAPRR Y

Arabidopsis Description

RPS17A40S ribosomal protein S17-1 [Source:UniProtKB/Swiss-Prot;Acc:P49205]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.