Factsheet for PGSC0003DMT400060127

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055230.1.1	Tomato	nucleus	98.61	98.61
PGSC0003DMT400019655	Potato	nucleus	97.92	97.92
GSMUA_Achr11P...	Banana	cytosol	79.17	80.85
GSMUA_Achr8P12400_001	Banana	cytosol	77.08	78.17
GSMUA_Achr1P00810_001	Banana	nucleus	78.47	77.93
PGSC0003DMT400072583	Potato	cytosol	81.25	77.48
Os03t0109500-00	Rice	plasma membrane	72.22	72.22
Zm00001d045000_P001	Maize	mitochondrion	70.83	71.83
EER88019	Sorghum	cytosol	69.44	70.42
Zm00001d037111_P001	Maize	plastid	69.44	70.42
Os10t0411800-01	Rice	nucleus	68.75	70.21
TraesCS1A01G159100.1	Wheat	nucleus	68.06	68.53
TraesCS1D01G156400.2	Wheat	golgi	68.06	68.53
TraesCS1B01G174800.1	Wheat	golgi, unclear	67.36	67.83
GSMUA_Achr4P29180_001	Banana	mitochondrion	77.08	66.07
HORVU1Hr1G042220.1	Barley	nucleus	68.06	55.68

Protein Annotations

Gene3D:1.10.60.20	EntrezGene:102583185	MapMan:17.1.3.1.19	ProteinID:ABA46777	ProteinID:ABA46777.1	EMBL:DQ200384
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036401	UniProt:M1C5A4	HAMAP:MF_00511	PFAM:PF00833
EnsemblPlantsGene:PGSC0003DMG400023394	PGSC:PGSC0003DMG400023394	EnsemblPlants:PGSC0003DMT400060127	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2
InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI000294D119	RefSeq:XP_006345872.1
RefSeq:XP_006345873.1	:	:	:	:	:

Description

40S ribosomal protein S17 [Source:PGSC_GENE;Acc:PGSC0003DMG400023394]

Coordinates

chr5:-:50934449..50937151

Molecular Weight (calculated)

16250.9 Da

IEP (calculated)

10.601

GRAVY (calculated)

-0.515

Length

144 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERY YSKMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDLIEVDK
101: ETLDMLSALG MSDLPGVVKQ AAEPQAVAAL PTYGRGAGGF GRKY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.