Factsheet for Os03t0109500-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os06t0679100-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Os02t0656300-01	AT3G48150.1	21798944
AT2G04390.1	Os06t0679100-00	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0411800-01	Rice	nucleus	81.25	82.98
KRH50389	Soybean	cytosol	69.44	78.12
CDY47259	Canola	cytosol	74.31	78.1
CDX80997	Canola	cytosol	74.31	78.1
GSMUA_Achr11P...	Banana	cytosol	76.39	78.01
Bra005887.1-P	Field mustard	cytosol	73.61	77.37
CDY04927	Canola	cytosol	71.53	75.74
KRH32794	Soybean	cytosol	72.92	75.54
Bra009431.1-P	Field mustard	cytosol	70.83	75.0
CDY44878	Canola	cytosol	70.83	75.0
CDX70203	Canola	cytosol	70.83	75.0
GSMUA_Achr8P12400_001	Banana	cytosol	73.61	74.65
VIT_08s0007g02620.t01	Wine grape	cytosol	72.92	74.47
KRH72240	Soybean	endoplasmic reticulum	72.22	74.29
CDY11309	Canola	cytosol	69.44	74.07
Bra005820.1-P	Field mustard	cytosol	69.44	74.07
KRG89343	Soybean	nucleus	69.44	74.07
GSMUA_Achr1P00810_001	Banana	nucleus	74.31	73.79
AT5G04800.2	Thale cress	cytosol	72.22	73.76
CDY19565	Canola	cytosol	57.64	73.45
CDY25845	Canola	cytosol	57.64	73.45
CDY48004	Canola	cytosol	57.64	73.45
Bra002983.1-P	Field mustard	cytosol	57.64	73.45
CDY00960	Canola	cytosol	70.83	73.38
AT2G05220.1	Thale cress	cytosol	70.83	72.86
AT3G10610.1	Thale cress	cytosol	70.83	72.86
PGSC0003DMT400019655	Potato	nucleus	72.22	72.22
PGSC0003DMT400060127	Potato	extracellular	72.22	72.22
Solyc05g055230.1.1	Tomato	nucleus	72.22	72.22
AT2G04390.1	Thale cress	cytosol	70.14	71.63
Solyc11g006690.1.1	Tomato	nucleus	71.53	71.53
VIT_13s0073g00120.t01	Wine grape	cytosol	71.53	71.53
GSMUA_Achr4P29180_001	Banana	mitochondrion	72.22	61.9
KRH30810	Soybean	cytosol, endoplasmic reticulum	35.42	57.95
Bra028778.1-P	Field mustard	cytosol	70.83	56.98
CDY14138	Canola	nucleus	70.83	55.14

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EntrezGene:4331346	ProteinID:AAN61484.1	ProteinID:ABF93576.1	ProteinID:BAF10622.1
ProteinID:BAS81907.1	ProteinID:EAZ25310.1	GO:GO:0000028	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0022627	InterPro:IPR036401	HAMAP:MF_00511	EnsemblPlantsGene:Os03g0109500	EnsemblPlants:Os03t0109500-00
PFAM:PF00833	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	UniProt:Q8H7V0	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e
SUPFAM:SSF116820	UniParc:UPI00000AD28F	RefSeq:XP_015628905.1	:	:	:

Description

Similar to 40S ribosomal protein S17-4. (Os03t0109500-00)

Coordinates

chr3:-:559280..559911

Molecular Weight (calculated)

16616.2 Da

IEP (calculated)

10.962

GRAVY (calculated)

-0.730

Length

144 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KTSRQVIEKY YSRMTLDFHT NKKVLEEVSI LPSKRLRNKV AGFSTHLMRR IQRGPVRGIS LKLQEEERER RMDFVPDRSA LEVDDIRVDK
101: ETLDMLTSLG MADLPGVVRQ PDASTSAPQQ YGAARLPYAR RDRA

Best Arabidopsis Sequence Match ( AT3G10610.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR

Arabidopsis Description

RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.