CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	KRH24006	AT3G48150.1	21798944
AT2G04390.1	KRH27971	AT3G48150.1	21798944
AT2G04390.1	KRH29310	AT3G48150.1	21798944
AT2G04390.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72240	Soybean	endoplasmic reticulum	98.56	97.86
KRG89343	Soybean	nucleus	84.89	87.41
CDY47259	Canola	cytosol	85.61	86.86
Bra005887.1-P	Field mustard	cytosol	85.61	86.86
CDY04927	Canola	cytosol	84.89	86.76
KRH50389	Soybean	cytosol	79.86	86.72
CDX80997	Canola	cytosol	84.89	86.13
VIT_08s0007g02620.t01	Wine grape	cytosol	85.61	84.4
CDY00960	Canola	cytosol	83.45	83.45
AT5G04800.2	Thale cress	cytosol	84.17	82.98
AT2G05220.1	Thale cress	cytosol	82.73	82.14
AT2G04390.1	Thale cress	cytosol	82.73	81.56
Bra005820.1-P	Field mustard	cytosol	79.14	81.48
CDY11309	Canola	cytosol	79.14	81.48
Solyc11g006690.1.1	Tomato	nucleus	84.17	81.25
Bra009431.1-P	Field mustard	cytosol	79.14	80.88
CDX70203	Canola	cytosol	79.14	80.88
CDY44878	Canola	cytosol	79.14	80.88
Solyc05g055230.1.1	Tomato	nucleus	83.45	80.56
AT3G10610.1	Thale cress	cytosol	80.58	80.0
CDY48004	Canola	cytosol	64.75	79.65
Bra002983.1-P	Field mustard	cytosol	64.75	79.65
CDY25845	Canola	cytosol	64.75	79.65
CDY19565	Canola	cytosol	64.75	79.65
PGSC0003DMT400072583	Potato	cytosol	80.58	74.17
Os03t0109500-00	Rice	plasma membrane	75.54	72.92
KRH30810	Soybean	cytosol, endoplasmic reticulum	46.04	72.73
Zm00001d045000_P001	Maize	mitochondrion	72.66	71.13
Os10t0411800-01	Rice	nucleus	71.94	70.92
TraesCS1B01G174800.1	Wheat	golgi, unclear	72.66	70.63
EER88019	Sorghum	cytosol	71.94	70.42
Zm00001d037111_P001	Maize	plastid	71.94	70.42
TraesCS1A01G159100.1	Wheat	nucleus	71.94	69.93
TraesCS1D01G156400.2	Wheat	golgi	71.94	69.93
GSMUA_Achr5P10190_001	Banana	cytosol	23.74	68.75
Bra028778.1-P	Field mustard	cytosol	83.45	64.8
CDY14138	Canola	nucleus	84.17	63.24
HORVU1Hr1G042220.1	Barley	nucleus	71.94	56.82

Protein Annotations

Gene3D:1.10.60.20	EntrezGene:100785402	MapMan:17.1.3.1.19	EMBL:ACUP02006167	EnsemblPlantsGene:GLYMA_10G076400	GO:GO:0000028
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	UniProt:I1L9G9
InterPro:IPR036401	EnsemblPlants:KRH32794	ProteinID:KRH32794	ProteinID:KRH32794.1	HAMAP:MF_00511	PFAM:PF00833
ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS
SUPFAM:SSF116820	UniParc:UPI0001BA856C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:7957604..7959326

Molecular Weight (calculated)

15811.4 Da

IEP (calculated)

10.887

GRAVY (calculated)

-0.458

Length

139 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERY YSRMTLDFHT NKKVLEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDVSA IRTDQIEVDK
101: ETLDMLAALG MSEVPGVVQV DPVAVQAPLG FGRGAGRRY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.