Factsheet for Bra002983.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra018081.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	Bra018081.1-P	AT3G48150.1	21798944
AT2G04390.1	Bra033769.1-P	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19565	Canola	cytosol	100.0	100.0
CDY25845	Canola	cytosol	100.0	100.0
CDY48004	Canola	cytosol	100.0	100.0
Bra005820.1-P	Field mustard	cytosol	84.96	71.11
Bra009431.1-P	Field mustard	cytosol	84.96	70.59
KRH50389	Soybean	cytosol	78.76	69.53
Bra005887.1-P	Field mustard	cytosol	83.19	68.61
AT2G05220.1	Thale cress	cytosol	84.07	67.86
AT5G04800.2	Thale cress	cytosol	84.07	67.38
AT2G04390.1	Thale cress	cytosol	84.07	67.38
KRG89343	Soybean	nucleus	79.65	66.67
KRH32794	Soybean	cytosol	79.65	64.75
KRH72240	Soybean	endoplasmic reticulum	79.65	64.29
Solyc11g006690.1.1	Tomato	nucleus	81.42	63.89
Solyc05g055230.1.1	Tomato	nucleus	81.42	63.89
VIT_08s0007g02620.t01	Wine grape	cytosol	79.65	63.83
GSMUA_Achr5P10190_001	Banana	cytosol	26.55	62.5
PGSC0003DMT400072583	Potato	cytosol	79.65	59.6
Os03t0109500-00	Rice	plasma membrane	73.45	57.64
Zm00001d045000_P001	Maize	mitochondrion	71.68	57.04
Os10t0411800-01	Rice	nucleus	70.8	56.74
EER88019	Sorghum	cytosol	70.8	56.34
Zm00001d037111_P001	Maize	plastid	70.8	56.34
TraesCS1A01G159100.1	Wheat	nucleus	70.8	55.94
TraesCS1B01G174800.1	Wheat	golgi, unclear	70.8	55.94
TraesCS1D01G156400.2	Wheat	golgi	70.8	55.94
Bra028778.1-P	Field mustard	cytosol	84.07	53.07
KRH30810	Soybean	cytosol, endoplasmic reticulum	38.05	48.86
HORVU1Hr1G042220.1	Barley	nucleus	70.8	45.45

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	EnsemblPlantsGene:Bra002983	EnsemblPlants:Bra002983.1	EnsemblPlants:Bra002983.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR036401	UniProt:M4CFK1	HAMAP:MF_00511	PFAM:PF00833	ScanProsite:PS00712
PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820
UniParc:UPI00025440A6	:	:	:	:	:

Description

AT5G04800 (E=2e-047) | 40S ribosomal protein S17 (RPS17D)

Coordinates

chrA10:-:6295181..6296995

Molecular Weight (calculated)

13327.3 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.629

Length

113 amino acids

Sequence
(BLAST)

001: MAEEDLECGR WCFVELLRTV KKSSRQVIEK YYSRMTLDFH TNKKILEEVA IIPSKRLRNK IAGFSTHLMK RIQKGPVRGI SLKLQEEERE RRMDFVPDES
101: AIKTDVIKVD KES

Best Arabidopsis Sequence Match ( AT2G05220.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY

Arabidopsis Description

RPS17B40S ribosomal protein S17-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ36]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.