Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G04390.1 | GSMUA_Achr11P... | AT3G48150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002983.1-P | Field mustard | cytosol | 62.5 | 26.55 |
| CDY25845 | Canola | cytosol | 62.5 | 26.55 |
| CDY19565 | Canola | cytosol | 62.5 | 26.55 |
| CDY48004 | Canola | cytosol | 62.5 | 26.55 |
| KRH50389 | Soybean | cytosol | 66.67 | 25.0 |
| KRG89343 | Soybean | nucleus | 68.75 | 24.44 |
| Bra005820.1-P | Field mustard | cytosol | 68.75 | 24.44 |
| CDY11309 | Canola | cytosol | 68.75 | 24.44 |
| CDX70203 | Canola | cytosol | 68.75 | 24.26 |
| CDY44878 | Canola | cytosol | 68.75 | 24.26 |
| CDY04927 | Canola | cytosol | 68.75 | 24.26 |
| Bra009431.1-P | Field mustard | cytosol | 68.75 | 24.26 |
| GSMUA_Achr11P... | Banana | cytosol | 70.83 | 24.11 |
| CDX80997 | Canola | cytosol | 68.75 | 24.09 |
| Bra005887.1-P | Field mustard | cytosol | 68.75 | 24.09 |
| CDY47259 | Canola | cytosol | 68.75 | 24.09 |
| CDY00960 | Canola | cytosol | 68.75 | 23.74 |
| KRH32794 | Soybean | cytosol | 68.75 | 23.74 |
| VIT_13s0073g00120.t01 | Wine grape | cytosol | 70.83 | 23.61 |
| AT3G10610.1 | Thale cress | cytosol | 68.75 | 23.57 |
| AT2G05220.1 | Thale cress | cytosol | 68.75 | 23.57 |
| KRH72240 | Soybean | endoplasmic reticulum | 68.75 | 23.57 |
| AT5G04800.2 | Thale cress | cytosol | 68.75 | 23.4 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 68.75 | 23.4 |
| AT2G04390.1 | Thale cress | cytosol | 68.75 | 23.4 |
| GSMUA_Achr1P00810_001 | Banana | nucleus | 68.75 | 22.76 |
| PGSC0003DMT400072583 | Potato | cytosol | 68.75 | 21.85 |
| GSMUA_Achr8P12400_001 | Banana | cytosol | 64.58 | 21.83 |
| GSMUA_Achr4P29180_001 | Banana | mitochondrion | 68.75 | 19.64 |
| Bra028778.1-P | Field mustard | cytosol | 68.75 | 18.44 |
| CDY14138 | Canola | nucleus | 68.75 | 17.84 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 31.25 | 17.05 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr5G10190_001 | EnsemblPlants:GSMUA_Achr5P10190_001 |
| EnsemblPlants:GSMUA_Achr5T10190_001 | InterPro:IPR036401 | UniProt:M0SX98 | PFAM:PF00833 | PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 |
| InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | SUPFAM:SSF116820 | UniParc:UPI000296F26D | : | : |
Description
40S ribosomal protein S17-2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G10190_001]
Coordinates
chr5:-:7269729..7269875
Molecular Weight (calculated)
5810.1 Da
IEP (calculated)
10.536
GRAVY (calculated)
-0.621
Length
48 amino acids
Sequence
(BLAST)
(BLAST)
1: MGHDWTKTVK KSILQEIQRY YSRATLDFYI NKKILVELAI DPSRRLRN
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY
101: ETLEMLASLG MSDTSGISAV EPQQAMAPIA AFGGRAPRRY
Arabidopsis Description
RPS17B40S ribosomal protein S17-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ36]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.