Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g055230.1.1 | Tomato | nucleus | 85.42 | 85.42 |
| Solyc11g006690.1.1 | Tomato | nucleus | 85.42 | 85.42 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 81.25 | 82.98 |
| PGSC0003DMT400072583 | Potato | cytosol | 81.25 | 77.48 |
| Zm00001d045000_P001 | Maize | mitochondrion | 70.83 | 71.83 |
| Os03t0109500-00 | Rice | plasma membrane | 71.53 | 71.53 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 70.83 | 71.33 |
| TraesCS1D01G156400.2 | Wheat | golgi | 70.83 | 71.33 |
| EER88019 | Sorghum | cytosol | 70.14 | 71.13 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 23.61 | 70.83 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 70.14 | 70.63 |
| Zm00001d037111_P001 | Maize | plastid | 69.44 | 70.42 |
| Os10t0411800-01 | Rice | nucleus | 68.75 | 70.21 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 69.44 | 56.82 |
Protein Annotations
| Gene3D:1.10.60.20 | EntrezGene:100243000 | wikigene:100243000 | MapMan:17.1.3.1.19 | UniProt:A5BHY1 | EMBL:AM460071 |
| ProteinID:CAN67946 | ProteinID:CAN67946.1 | ProteinID:CCB49571 | ProteinID:CCB49571.1 | EMBL:FN595510 | GO:GO:0000028 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 | InterPro:IPR036401 |
| EntrezGene:LOC100243000 | wikigene:LOC100243000 | HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 | PANTHER:PTHR10732 |
| PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 | TIGR:TC53812 |
| TIGR:TC61049 | UniParc:UPI0001521013 | ArrayExpress:VIT_13s0073g00120 | EnsemblPlantsGene:VIT_13s0073g00120 | EnsemblPlants:VIT_13s0073g00120.t01 | RefSeq:XP_002268997 |
| RefSeq:XP_002268997.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:+:13246383..13247266
Molecular Weight (calculated)
16188.9 Da
IEP (calculated)
10.658
GRAVY (calculated)
-0.450
Length
144 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIERY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDVIKVDK
101: ETIDMLSALG MAELPGVVET EPEVVAPAMV FGRGGAGGAG GRRY
101: ETIDMLSALG MAELPGVVET EPEVVAPAMV FGRGGAGGAG GRRY
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y
Arabidopsis Description
RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.