Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P00810_001 | Banana | nucleus | 73.21 | 84.83 |
| GSMUA_Achr11P... | Banana | cytosol | 69.64 | 82.98 |
| GSMUA_Achr8P12400_001 | Banana | cytosol | 67.26 | 79.58 |
| Solyc11g006690.1.1 | Tomato | nucleus | 66.07 | 77.08 |
| Solyc05g055230.1.1 | Tomato | nucleus | 66.07 | 77.08 |
| PGSC0003DMT400060127 | Potato | extracellular | 66.07 | 77.08 |
| PGSC0003DMT400019655 | Potato | nucleus | 65.48 | 76.39 |
| Zm00001d045000_P001 | Maize | mitochondrion | 64.29 | 76.06 |
| Zm00001d037111_P001 | Maize | plastid | 63.69 | 75.35 |
| EER88019 | Sorghum | cytosol | 63.1 | 74.65 |
| Os10t0411800-01 | Rice | nucleus | 62.5 | 74.47 |
| Os03t0109500-00 | Rice | plasma membrane | 61.9 | 72.22 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 60.12 | 70.63 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 59.52 | 69.93 |
| TraesCS1D01G156400.2 | Wheat | golgi | 59.52 | 69.93 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 19.64 | 68.75 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 63.1 | 60.23 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr4G29180_001 | EnsemblPlants:GSMUA_Achr4P29180_001 |
| EnsemblPlants:GSMUA_Achr4T29180_001 | InterPro:IPR036401 | UniProt:M0ST30 | HAMAP:MF_00511 | PFAM:PF00833 | ScanProsite:PS00712 |
| PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e | InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 |
| UniParc:UPI0002961571 | : | : | : | : | : |
Description
40S ribosomal protein S17 [Source:GMGC_GENE;Acc:GSMUA_Achr4G29180_001]
Coordinates
chr4:+:27261818..27262643
Molecular Weight (calculated)
19183.3 Da
IEP (calculated)
11.124
GRAVY (calculated)
-0.677
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRPQHNRHK RLSRLPTREE ATAASAEMGR VRTKTVKKSS RQVIERYYSR MTVDFHMNKK ILEEVAIIPS KRLRNKIAGF STHLMRRIQR GPVRGISLKL
101: QEEERERRMD FVPDESAIKV DHIEIDGQTF DMLAALGMAD LPGVEKQAVA SAPPAYSSRP VGGYGRRL
101: QEEERERRMD FVPDESAIKV DHIEIDGQTF DMLAALGMAD LPGVEKQAVA SAPPAYSSRP VGGYGRRL
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
Arabidopsis Description
RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.