CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11309	Canola	cytosol	88.49	91.11
CDY04927	Canola	cytosol	88.49	90.44
AT3G10610.1	Thale cress	cytosol	89.93	89.29
CDX70203	Canola	cytosol	87.05	88.97
CDY44878	Canola	cytosol	87.05	88.97
CDY47259	Canola	cytosol	85.61	86.86
CDX80997	Canola	cytosol	84.89	86.13
KRH32794	Soybean	cytosol	83.45	83.45
CDY19565	Canola	cytosol	67.63	83.19
CDY25845	Canola	cytosol	67.63	83.19
CDY48004	Canola	cytosol	67.63	83.19
KRH72240	Soybean	endoplasmic reticulum	83.45	82.86
KRH50389	Soybean	cytosol	76.26	82.81
KRG89343	Soybean	nucleus	77.7	80.0
Solyc11g006690.1.1	Tomato	nucleus	81.3	78.47
Solyc05g055230.1.1	Tomato	nucleus	80.58	77.78
VIT_08s0007g02620.t01	Wine grape	cytosol	78.42	77.31
PGSC0003DMT400072583	Potato	cytosol	77.7	71.52
Os03t0109500-00	Rice	plasma membrane	73.38	70.83
Os10t0411800-01	Rice	nucleus	71.22	70.21
GSMUA_Achr5P10190_001	Banana	cytosol	23.74	68.75
Zm00001d037111_P001	Maize	plastid	69.78	68.31
Zm00001d045000_P001	Maize	mitochondrion	69.78	68.31
EER88019	Sorghum	cytosol	69.06	67.61
TraesCS1A01G159100.1	Wheat	nucleus	69.06	67.13
TraesCS1B01G174800.1	Wheat	golgi, unclear	69.06	67.13
TraesCS1D01G156400.2	Wheat	golgi	69.06	67.13
CDY14138	Canola	nucleus	87.05	65.41
KRH30810	Soybean	cytosol, endoplasmic reticulum	39.57	62.5
HORVU1Hr1G042220.1	Barley	nucleus	69.06	54.55

Protein Annotations

Gene3D:1.10.60.20	MapMan:17.1.3.1.19	GO:A0A078EFU8	EnsemblPlants:CDY00960	ProteinID:CDY00960	ProteinID:CDY00960.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626	GO:GO:0022627	EnsemblPlantsGene:GSBRNA2T00110971001
InterPro:IPR036401	HAMAP:MF_00511	PFAM:PF00833	ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2
InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS	SUPFAM:SSF116820	UniParc:UPI0004EE7E2E	:

Description

BnaC05g42400D40S ribosomal protein S17-3 [Source:Projected from Arabidopsis thaliana (AT3G10610) UniProtKB/Swiss-Prot;Acc:Q9SQZ1]

Coordinates

chrLK031923:+:317243..318258

Molecular Weight (calculated)

15876.3 Da

IEP (calculated)

10.807

GRAVY (calculated)

-0.604

Length

139 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDDVKVDK
101: ETLEMLASLG MSDVSGFSQV ETQAAVVPSN TFGRGGRRF

Best Arabidopsis Sequence Match ( AT3G10610.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR

Arabidopsis Description

RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.