Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00960 | Canola | cytosol | 89.29 | 89.93 |
| AT5G04800.2 | Thale cress | cytosol | 89.29 | 88.65 |
| AT2G05220.1 | Thale cress | cytosol | 88.57 | 88.57 |
| AT2G04390.1 | Thale cress | cytosol | 87.14 | 86.52 |
| KRH50389 | Soybean | cytosol | 76.43 | 83.59 |
| KRG89343 | Soybean | nucleus | 77.86 | 80.74 |
| KRH72240 | Soybean | endoplasmic reticulum | 80.71 | 80.71 |
| KRH32794 | Soybean | cytosol | 80.0 | 80.58 |
| VIT_08s0007g02620.t01 | Wine grape | cytosol | 77.86 | 77.31 |
| Solyc11g006690.1.1 | Tomato | nucleus | 78.57 | 76.39 |
| Solyc05g055230.1.1 | Tomato | nucleus | 77.86 | 75.69 |
| Os03t0109500-00 | Rice | plasma membrane | 72.86 | 70.83 |
| PGSC0003DMT400072583 | Potato | cytosol | 75.71 | 70.2 |
| Os10t0411800-01 | Rice | nucleus | 70.0 | 69.5 |
| Zm00001d045000_P001 | Maize | mitochondrion | 70.0 | 69.01 |
| GSMUA_Achr5P10190_001 | Banana | cytosol | 23.57 | 68.75 |
| EER88019 | Sorghum | cytosol | 69.29 | 68.31 |
| Zm00001d037111_P001 | Maize | plastid | 69.29 | 68.31 |
| TraesCS1A01G159100.1 | Wheat | nucleus | 69.29 | 67.83 |
| TraesCS1B01G174800.1 | Wheat | golgi, unclear | 69.29 | 67.83 |
| TraesCS1D01G156400.2 | Wheat | golgi | 69.29 | 67.83 |
| KRH30810 | Soybean | cytosol, endoplasmic reticulum | 40.71 | 64.77 |
| HORVU1Hr1G042220.1 | Barley | nucleus | 69.29 | 55.11 |
Protein Annotations
| Gene3D:1.10.60.20 | MapMan:17.1.3.1.19 | EntrezGene:820230 | UniProt:A0A178V778 | ProteinID:AAF76367.1 | ProteinID:AAG51372.1 |
| ProteinID:AEE74934.1 | ArrayExpress:AT3G10610 | EnsemblPlantsGene:AT3G10610 | RefSeq:AT3G10610 | TAIR:AT3G10610 | RefSeq:AT3G10610-TAIR-G |
| EnsemblPlants:AT3G10610.1 | TAIR:AT3G10610.1 | EMBL:AY063881 | EMBL:AY088250 | EMBL:AY091313 | GO:GO:0000028 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022626 | GO:GO:0022627 |
| GO:GO:0030529 | InterPro:IPR036401 | HAMAP:MF_00511 | RefSeq:NP_187672.1 | ProteinID:OAP02037.1 | PFAM:PF00833 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00712 | PANTHER:PTHR10732 | PANTHER:PTHR10732:SF2 | UniProt:Q9SQZ1 | InterPro:RPS17e-like_sf | InterPro:Ribosomal_S17e |
| InterPro:Ribosomal_S17e_CS | SUPFAM:SSF116820 | UniParc:UPI0000001448 | : | : | : |
Description
RPS17C40S ribosomal protein S17-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQZ1]
Coordinates
chr3:+:3318975..3320187
Molecular Weight (calculated)
16036.7 Da
IEP (calculated)
10.720
GRAVY (calculated)
-0.572
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKIDDVKVDK
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
101: ETLEMLASLG MSDIAGISQV ETQQAMAPAV FGRPAGRYQR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.