CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH24006
KRH27971
KRH29310
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04390.1	KRH24006	AT3G48150.1	21798944
AT2G04390.1	KRH27971	AT3G48150.1	21798944
AT2G04390.1	KRH29310	AT3G48150.1	21798944
AT2G04390.1	KRH77487	AT3G48150.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32794	Soybean	cytosol	97.86	98.56
KRG89343	Soybean	nucleus	85.0	88.15
KRH50389	Soybean	cytosol	80.0	87.5
CDY47259	Canola	cytosol	84.29	86.13
Bra005887.1-P	Field mustard	cytosol	84.29	86.13
CDY04927	Canola	cytosol	83.57	86.03
CDX80997	Canola	cytosol	83.57	85.4
VIT_08s0007g02620.t01	Wine grape	cytosol	84.29	83.69
CDY00960	Canola	cytosol	82.86	83.45
AT5G04800.2	Thale cress	cytosol	83.57	82.98
Bra005820.1-P	Field mustard	cytosol	80.0	82.96
CDY11309	Canola	cytosol	80.0	82.96
AT2G05220.1	Thale cress	cytosol	82.14	82.14
Bra009431.1-P	Field mustard	cytosol	79.29	81.62
CDX70203	Canola	cytosol	79.29	81.62
CDY44878	Canola	cytosol	79.29	81.62
AT2G04390.1	Thale cress	cytosol	82.14	81.56
Solyc11g006690.1.1	Tomato	nucleus	83.57	81.25
AT3G10610.1	Thale cress	cytosol	80.71	80.71
Solyc05g055230.1.1	Tomato	nucleus	82.86	80.56
CDY48004	Canola	cytosol	64.29	79.65
Bra002983.1-P	Field mustard	cytosol	64.29	79.65
CDY25845	Canola	cytosol	64.29	79.65
CDY19565	Canola	cytosol	64.29	79.65
PGSC0003DMT400072583	Potato	cytosol	80.0	74.17
KRH30810	Soybean	cytosol, endoplasmic reticulum	46.43	73.86
Os03t0109500-00	Rice	plasma membrane	74.29	72.22
Zm00001d045000_P001	Maize	mitochondrion	71.43	70.42
Os10t0411800-01	Rice	nucleus	70.71	70.21
TraesCS1B01G174800.1	Wheat	golgi, unclear	71.43	69.93
EER88019	Sorghum	cytosol	70.71	69.72
Zm00001d037111_P001	Maize	plastid	70.71	69.72
TraesCS1A01G159100.1	Wheat	nucleus	70.71	69.23
TraesCS1D01G156400.2	Wheat	golgi	70.71	69.23
GSMUA_Achr5P10190_001	Banana	cytosol	23.57	68.75
Bra028778.1-P	Field mustard	cytosol	82.14	64.25
CDY14138	Canola	nucleus	82.86	62.7
HORVU1Hr1G042220.1	Barley	nucleus	70.71	56.25

Protein Annotations

Gene3D:1.10.60.20	EntrezGene:100819067	MapMan:17.1.3.1.19	EMBL:ACUP02001196	EnsemblPlantsGene:GLYMA_02G200300	GO:GO:0000028
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022627	UniProt:I1JGK9
InterPro:IPR036401	EnsemblPlants:KRH72240	ProteinID:KRH72240	ProteinID:KRH72240.1	HAMAP:MF_00511	PFAM:PF00833
ScanProsite:PS00712	PANTHER:PTHR10732	PANTHER:PTHR10732:SF2	InterPro:RPS17e-like_sf	InterPro:Ribosomal_S17e	InterPro:Ribosomal_S17e_CS
SUPFAM:SSF116820	UniParc:UPI0001BA93BC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:38361258..38362577

Molecular Weight (calculated)

15908.6 Da

IEP (calculated)

10.887

GRAVY (calculated)

-0.479

Length

140 amino acids

Sequence
(BLAST)

001: MGRVRTKTVK KSSRQVIERY YSRMTLDFHT NKKVLEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDVSA IRTDQIEVDK
101: ETLDMLAALG MSEVPGIVQV DPVAVQAPLG FGRGGPGRRY

Best Arabidopsis Sequence Match ( AT5G04800.1 )
(BLAST)

001: MGRVRTKTVK KSSRQVIEKY YSRMTLDFHT NKKILEEVAI IPSKRLRNKI AGFSTHLMKR IQKGPVRGIS LKLQEEERER RMDFVPDESA IKTDEIKVDK
101: ETLEMLASLG MSDTPGISAV EPQQAMAPIA AFGGGRAPRR Y

Arabidopsis Description

RPS17D40S ribosomal protein S17-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZ17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.