Factsheet for Solyc06g009270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g062920.2.1
Solyc02g085570.2.1
Solyc08g014420.2.1
Solyc12g008750.1.1
Solyc12g019460.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G18730.1	Solyc08g014420.2.1	AT2G43790.1	21798944
AT2G18730.1	Solyc12g019460.1.1	AT2G43790.1	21798944
AT2G18730.1	Solyc02g062920.2.1	AT4G36690.1	21798944
AT2G18730.1	Solyc02g085570.2.1	AT4G36690.1	21798944
AT2G18730.1	Solyc12g008750.1.1	AT4G36690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018811	Potato	cytosol	41.16	99.5
Solyc07g006580.2.1	Tomato	cytosol	81.7	80.86
GSMUA_Achr10P...	Banana	cytosol	19.96	75.59
GSMUA_Achr1P23380_001	Banana	cytosol	32.02	71.63
KRH02925	Soybean	cytosol	66.94	67.08
KRH18970	Soybean	cytosol	66.74	66.88
VIT_11s0052g01840.t01	Wine grape	cytosol, plastid	69.65	65.43
KRH62935	Soybean	cytosol	65.07	64.54
KRH54995	Soybean	cytosol, plastid	64.24	64.38
CDY13009	Canola	cytosol	64.24	64.11
Bra038816.1-P	Field mustard	cytosol	64.24	64.11
HORVU6Hr1G083620.21	Barley	mitochondrion	51.56	63.92
CDY49312	Canola	cytosol	64.03	63.9
CDX88634	Canola	plastid	63.2	63.07
Bra006807.1-P	Field mustard	plastid	63.2	63.07
CDY30304	Canola	cytosol	62.37	62.63
CDY51490	Canola	cytosol	62.37	62.63
Bra038549.1-P	Field mustard	cytosol	61.95	62.21
GSMUA_Achr7P16340_001	Banana	cytosol	61.75	61.88
AT4G30340.1	Thale cress	cytosol	63.2	61.79
AT2G18730.1	Thale cress	cytosol	62.37	61.48
CDY28179	Canola	cytosol	62.58	61.3
Bra011184.1-P	Field mustard	cytosol	62.58	61.3
AT5G57690.1	Thale cress	cytosol, plastid	61.95	61.19
CDX68647	Canola	cytosol	62.16	61.02
EES07651	Sorghum	plastid	62.37	60.98
CDY68130	Canola	plastid	56.76	60.67
Os02t0787800-01	Rice	plasma membrane	61.33	60.45
Zm00001d018333_P001	Maize	plasma membrane	61.12	59.76
TraesCS6A01G347800.3	Wheat	cytosol, plastid	60.29	58.47
TraesCS6B01G381300.2	Wheat	cytosol	60.91	58.37
GSMUA_Achr10P...	Banana	cytosol	46.78	58.29
TraesCS6D01G330800.1	Wheat	cytosol	60.5	57.74
GSMUA_Achr6P03930_001	Banana	cytosol	14.76	54.62
KXG24829	Sorghum	plastid	57.8	53.36
TraesCS6B01G428500.1	Wheat	plastid	58.0	52.94
HORVU7Hr1G068230.1	Barley	plastid	57.8	52.85
TraesCS7D01G291600.1	Wheat	mitochondrion, plastid	57.38	52.47
TraesCS7A01G297200.1	Wheat	plastid	57.17	52.28
TraesCS7B01G198600.1	Wheat	plastid	56.96	52.09
Zm00001d024192_P001	Maize	mitochondrion, plastid	45.74	47.31
GSMUA_Achr1P23370_001	Banana	mitochondrion	26.82	46.07
GSMUA_Achr6P03940_001	Banana	cytosol	19.33	40.26
Solyc10g008640.2.1	Tomato	nucleus	32.64	31.85
Solyc12g005380.1.1	Tomato	cytosol	32.22	31.19
Solyc07g054830.2.1	Tomato	cytosol	31.39	29.55
Solyc05g056420.2.1	Tomato	endoplasmic reticulum, golgi	23.08	15.55
Solyc03g115370.2.1	Tomato	cytosol, endoplasmic reticulum, nucleus	22.04	14.52
Solyc12g039180.1.1	Tomato	cytosol, plasma membrane, plastid	21.0	13.7

Protein Annotations

KEGG:00561+2.7.1.107	KEGG:00564+2.7.1.107	KEGG:04070+2.7.1.107	Gene3D:3.40.50.10330	MapMan:5.2.1.4	InterPro:ATP-NAD_kinase_N
InterPro:DGK	InterPro:Diacylglycerol_kin_accessory	InterPro:Diacylglycerol_kinase_cat_dom	InterPro:Diacylglycerol_kinase_pln	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003951	GO:GO:0004143	GO:GO:0005488	GO:GO:0005524	GO:GO:0007154
GO:GO:0007165	GO:GO:0007205	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016310	GO:GO:0016740	InterPro:IPR001206	InterPro:IPR017438	UniProt:K4C3V7	InterPro:NAD/diacylglycerol_kinase_sf
PFAM:PF00609	PFAM:PF00781	PIRSF:PIRSF030829	PFscan:PS50146	PANTHER:PTHR11255	PANTHER:PTHR11255:SF56
SMART:SM00045	SMART:SM00046	SUPFAM:SSF111331	EnsemblPlantsGene:Solyc06g009270.2	EnsemblPlants:Solyc06g009270.2.1	UniParc:UPI0002766CD8
SEG:seg	:	:	:	:	:

Description

Diacylglycerol kinase [Source:UniProtKB/TrEMBL;Acc:K4C3V7]

Coordinates

chr6:-:3226578..3236590

Molecular Weight (calculated)

53622.1 Da

IEP (calculated)

8.599

GRAVY (calculated)

-0.372

Length

481 amino acids

Sequence
(BLAST)

001: MDSTASRRTA SGRSSVVESI KGFTFAGVRI SKEDLRRRIT MPEYLRLAIR EAIQNKDVDT VRRHLDTAYA AGAEIPQPAE EPIIVFINSK SGGRHGPQLK
101: ARLQELMGEE QVFDLSDVNP HEFVQYGLSC LEKFAALGDS CAKVTRERIR VVAAGGDGTV GWILGCLGDL KKQGREPVPP TGIIPLGTGN DLSRSFGWGG
201: SFPFNWKSAT KSILDRVATG PINRLDSWNL LISMPAGDKL ETPHSLKSTE DASLDQELEI DSELPKKLSN YQGVYYNYFS IGMDAQVAYG FHHLRNEKPY
301: LAQGPISNKL IYSGYSCTQG WFFTPCSSDP CLRGLNNILR LYVKKVNSSK WEKISVPSSV RSIVTLNLPS YGGGRNPWGR LKPEYLEKRG FVEAHADDGC
401: IEIFGLKQGW HASMVMVELI SAKHIAQASA IRFELRAGEW DEAYMQMDGE PWKQPISKEY STFIEIKRVP FQSLMVNGKR N

Best Arabidopsis Sequence Match ( AT4G30340.1 )
(BLAST)

001: MEETPRSVGE ASTTNFVAAR PSAKTDDAVT MRGCGFANLA LVGIDKEELR GRLAMPEYLR IAMRDCIKRK DSTEISDHLL LPGGAAADMA PHAPMVVFIN
101: PKSGGRHGPV LKERLQQLMT EEQVFDLTEV KPHEFVRYGL GCLDTLAAKG DECARECREK IRIMVAGGDG TVGWVLGCLG ELHKDGKSHI PPVGVIPLGT
201: GNDLSRSFSW GGSFPFAWRS AMKRTLHRAT LGSIARLDSW KIVVSMPSGE VVDPPYSLKP TIEETALDQA LDADGDVPPK AKSYEGVFYN YFSIGMDAQV
301: AYGFHHLRNE KPYLAQGPVT NKIIYSSYSC TQGWFCTPCV NNPALRGLRN IMKIHIKKAN CSEWEEIHVP KSVRSIVVLN LYNYGSGRHP WGNLRPKYLE
401: KRGFVEAHCD DGLIEIFGLK QGWHASFVMA EIISAKHIAQ AAAIRFELRG GDWKNAFLQM DGEPWKQPMK SDYSTFVEIK KVPFQSLMIN GE

Arabidopsis Description

DGK7Diacylglycerol kinase 7 [Source:UniProtKB/Swiss-Prot;Acc:F4JQ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.