Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G127700.1 | Wheat | nucleus | 99.6 | 99.6 |
| TraesCS1A01G096000.1 | Wheat | nucleus | 99.2 | 99.2 |
| HORVU1Hr1G022420.1 | Barley | nucleus | 98.8 | 98.8 |
| Zm00001d037602_P001 | Maize | extracellular | 81.12 | 79.53 |
| EES17747 | Sorghum | nucleus | 81.53 | 78.38 |
| GSMUA_Achr11P... | Banana | nucleus | 71.49 | 76.39 |
| VIT_07s0005g00650.t01 | Wine grape | nucleus | 70.68 | 75.86 |
| GSMUA_Achr2P02230_001 | Banana | nucleus | 75.9 | 75.6 |
| KRG97081 | Soybean | nucleus | 67.07 | 69.29 |
| KRH68830 | Soybean | nucleus | 66.27 | 68.46 |
| PGSC0003DMT400081386 | Potato | nucleus | 69.48 | 68.38 |
| Solyc09g075200.2.1 | Tomato | nucleus | 69.08 | 67.98 |
| AT2G47580.1 | Thale cress | nucleus | 67.47 | 67.2 |
| CDY63856 | Canola | nucleus | 63.86 | 62.35 |
| Bra004445.1-P | Field mustard | nucleus | 63.05 | 60.85 |
| CDX80118 | Canola | nucleus | 62.25 | 60.08 |
| TraesCS4D01G190200.1 | Wheat | nucleus | 48.59 | 51.93 |
| CDY39980 | Canola | nucleus | 33.73 | 51.53 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G105000.1 | EnsemblPlantsGene:TraesCS1D01G105000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR10501 |
| PANTHER:PTHR10501:SF40 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| TIGR:cd12246 | TIGR:cd12247 | MapMan:16.4.1.1.2 | : | : | : |
Description
No Description!
Coordinates
chr1D:+:96915465..96920537
Molecular Weight (calculated)
27679.7 Da
IEP (calculated)
9.797
GRAVY (calculated)
-0.391
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGEAGAGGG GEANGVQPNV TIYINNLNEK IKLEALKKSL NAVFSQFGKI IEVLAFKTLK HKGQAWVVFE DVASATEALK RMQDFPFYDK PMKIQYAKTK
101: SDVIAKADGT FVPREKRKRN DEKPEKKQKR EQHHDVNQAG VGMHAYPGAY GAPPLSQLPF GAGPKVMMPE IIVPNNILFV QELPHDATAL MLQMFFCQYP
201: GFKEVRMIEA KPGIAFVEYG DEGQATAAMN LLQGFKIKEN PMRITYAKK
101: SDVIAKADGT FVPREKRKRN DEKPEKKQKR EQHHDVNQAG VGMHAYPGAY GAPPLSQLPF GAGPKVMMPE IIVPNNILFV QELPHDATAL MLQMFFCQYP
201: GFKEVRMIEA KPGIAFVEYG DEGQATAAMN LLQGFKIKEN PMRITYAKK
001: MEMQEANQGG GSEVSPNQTI YINNLNEKVK LDELKKSLNA VFSQFGKILE ILAFKTFKHK GQAWVVFDNT ESASTAIAKM NNFPFYDKEM RIQYAKTKSD
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
101: VVAKADGTFV PREKRKRHEE KGGGKKKKDQ HHDSTQMGMP MNSAYPGVYG AAPPLSQVPY PGGMKPNMPE APAPPNNILF VQNLPHETTP MVLQMLFCQY
201: QGFKEVRMIE AKPGIAFVEF ADEMQSTVAM QGLQGFKIQQ NQMLITYAKK
Arabidopsis Description
U1AU1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZ67]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.