Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- extracellular 1
- cytosol 1
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra004879.1-P | |
| Bra006453.1-P | |
| Bra013840.1-P | |
| Bra019205.1-P | |
| Bra040332.1-P |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55983 | Canola | plastid | 100.0 | 100.0 |
| CDX81710 | Canola | plastid | 98.68 | 98.68 |
| Bra016661.1-P | Field mustard | cytosol | 85.53 | 89.04 |
| Bra026137.1-P | Field mustard | cytosol | 84.21 | 86.49 |
| AT1G15385.1 | Thale cress | cytosol | 76.32 | 79.45 |
Protein Annotations
| EnsemblPlants:Bra026767.1 | EnsemblPlants:Bra026767.1-P | EnsemblPlantsGene:Bra026767 | InterPro:DUF761_pln | PANTHER:PTHR33098 | PANTHER:PTHR33098:SF6 |
| PFAM:PF05553 | SEG:seg | UniParc:UPI0002542CC5 | UniProt:M4EDA7 | MapMan:35.2 | : |
Description
AT1G15385 (E=5e-023) | unknown protein
Coordinates
chrA09:+:33614870..33615100
Molecular Weight (calculated)
8648.4 Da
IEP (calculated)
10.399
GRAVY (calculated)
-0.807
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MMNNNNNKNN LKMSSAQESG NGTTNIVITE TRNNKKVERK ASMDVDKCAE AFITNFRKQL LLQRLESIEN MLSRGL
1: MNNNKNMKMM MSSAKESGNG TTNIVIKETM NKKVERKASM DVDKSAEAFI TKFRNQLLLQ RLESIENMLS KGP
Arabidopsis Description
Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8L7A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.