Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_12s0028g02240.t01 | |
| VIT_18s0001g09830.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G14130.1 | VIT_12s0028g02240.t01 | AT2G42580.1 | 19000166 |
| AT4G14130.1 | VIT_18s0001g09830.t01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0062g00610.t01 | Wine grape | cytosol | 99.25 | 99.25 |
| VIT_05s0062g00240.t01 | Wine grape | extracellular | 92.83 | 87.54 |
| VIT_05s0062g00250.t01 | Wine grape | extracellular | 89.43 | 84.95 |
| KRG97361 | Soybean | nucleus | 83.02 | 78.85 |
| KRH31558 | Soybean | nucleus | 81.89 | 78.62 |
| KRH42721 | Soybean | extracellular, nucleus | 82.64 | 77.39 |
| Solyc12g098610.1.1 | Tomato | nucleus | 75.85 | 77.01 |
| VIT_10s0003g02440.t01 | Wine grape | extracellular | 79.25 | 76.92 |
| KRH58823 | Soybean | extracellular, nucleus | 81.89 | 76.68 |
| PGSC0003DMT400056316 | Potato | extracellular | 77.74 | 74.64 |
| Solyc09g092520.2.1 | Tomato | nucleus | 77.74 | 74.64 |
| CDY61576 | Canola | vacuole | 75.85 | 71.79 |
| Bra038442.1-P | Field mustard | extracellular | 78.11 | 71.63 |
| AT4G14130.1 | Thale cress | extracellular | 77.74 | 71.28 |
| CDY27126 | Canola | extracellular | 77.74 | 71.28 |
| VIT_11s0052g01330.t01 | Wine grape | extracellular, vacuole | 70.19 | 70.99 |
| PGSC0003DMT400011902 | Potato | extracellular | 74.72 | 70.97 |
| VIT_11s0052g01220.t01 | Wine grape | extracellular | 75.47 | 70.18 |
| Bra014975.1-P | Field mustard | extracellular, vacuole | 76.23 | 69.42 |
| AT3G23730.1 | Thale cress | extracellular, vacuole | 75.47 | 68.73 |
| VIT_11s0052g01280.t01 | Wine grape | endoplasmic reticulum, extracellular | 76.6 | 68.58 |
| VIT_11s0052g01200.t01 | Wine grape | extracellular | 76.6 | 68.35 |
| VIT_11s0052g01320.t01 | Wine grape | extracellular | 76.23 | 68.24 |
| VIT_11s0052g01300.t01 | Wine grape | extracellular | 75.47 | 67.57 |
| VIT_11s0052g01250.t01 | Wine grape | extracellular | 73.58 | 67.47 |
| VIT_11s0052g01270.t01 | Wine grape | extracellular | 75.47 | 67.34 |
| VIT_11s0052g01260.t01 | Wine grape | endoplasmic reticulum, extracellular | 74.72 | 66.89 |
| VIT_11s0052g01340.t01 | Wine grape | extracellular | 68.3 | 66.54 |
| VIT_11s0052g01310.t01 | Wine grape | extracellular | 67.17 | 66.17 |
| VIT_11s0052g01230.t01 | Wine grape | cytosol | 68.3 | 65.11 |
| VIT_11s0052g01180.t01 | Wine grape | cytosol | 76.98 | 63.55 |
| CDY12366 | Canola | extracellular | 66.42 | 61.97 |
| VIT_11s0052g01190.t01 | Wine grape | vacuole | 75.85 | 54.47 |
| VIT_01s0150g00460.t01 | Wine grape | extracellular | 56.6 | 48.86 |
| VIT_11s0016g03480.t01 | Wine grape | extracellular | 52.83 | 48.11 |
| VIT_17s0053g00610.t01 | Wine grape | cytosol | 38.87 | 47.69 |
| VIT_12s0134g00160.t01 | Wine grape | extracellular | 49.06 | 43.92 |
| VIT_03s0088g00650.t01 | Wine grape | extracellular, vacuole | 48.68 | 43.73 |
| VIT_10s0116g00520.t01 | Wine grape | extracellular, vacuole | 46.42 | 41.0 |
| VIT_11s0052g01210.t01 | Wine grape | extracellular, plastid | 68.68 | 11.5 |
Protein Annotations
| EntrezGene:100232905 | wikigene:100232905 | Gene3D:2.60.120.200 | MapMan:50.2.4 | ProteinID:CCB61781 | ProteinID:CCB61781.1 |
| InterPro:ConA-like_dom_sf | UniProt:F6I4E4 | EMBL:FN596745 | InterPro:GH16 | InterPro:GH16_AS | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 |
| GO:GO:0005975 | GO:GO:0006073 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010411 |
| GO:GO:0016043 | GO:GO:0016740 | GO:GO:0016762 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 |
| GO:GO:0042546 | GO:GO:0048046 | GO:GO:0071555 | InterPro:IPR000757 | EntrezGene:LOC100232905 | wikigene:LOC100232905 |
| PFAM:PF00722 | PFAM:PF06955 | PIRSF:PIRSF005604 | ScanProsite:PS01034 | PFscan:PS51762 | PANTHER:PTHR31062 |
| PANTHER:PTHR31062:SF62 | SUPFAM:SSF49899 | UniParc:UPI00015CD04A | ArrayExpress:VIT_05s0062g00480 | EnsemblPlantsGene:VIT_05s0062g00480 | EnsemblPlants:VIT_05s0062g00480.t01 |
| unigene:Vvi.8148 | InterPro:XET_C | RefSeq:XP_002266082 | RefSeq:XP_002266082.1 | RefSeq:XP_002266121 | RefSeq:XP_002266121.1 |
| InterPro:XTH | SEG:seg | : | : | : | : |
Description
Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:F6I4E4]
Coordinates
chr5:-:18634388..18636040
Molecular Weight (calculated)
30436.7 Da
IEP (calculated)
9.348
GRAVY (calculated)
-0.472
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLATASASN FYQDFDITWG DHRAKIFNGG QLLSLSLDKT SGSGFQSKKE YLFGRIDMQL KLVAGNSAGT VTAYYLSSQG PTHDEIDFEF LGNLSGDPYI
101: LHTNVFTQGK GNREQQFYLW FDPTRNFHTY SIAWSAQHII FLVDNVPIRL FKNAESMGVP FPKNQPMRIY SSLWNADDWA TRGGLVKTDW SKAPFTAYYR
201: NFRASTSTST STFSDSAFQT QELDAYSRRR LRWVQKNFMI YNYCTDLKRF PQGVPPECKH SRFNL
101: LHTNVFTQGK GNREQQFYLW FDPTRNFHTY SIAWSAQHII FLVDNVPIRL FKNAESMGVP FPKNQPMRIY SSLWNADDWA TRGGLVKTDW SKAPFTAYYR
201: NFRASTSTST STFSDSAFQT QELDAYSRRR LRWVQKNFMI YNYCTDLKRF PQGVPPECKH SRFNL
001: MGPSSSLTTI VATVLLVTLF GSAYASNFFD EFDLTWGDHR GKIFNGGNML SLSLDQVSGS GFKSKKEYLF GRIDMQLKLV AGNSAGTVTA YYLSSQGATH
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK SQPMRIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV
101: DEIDFEFLGN ETGKPYVLHT NVFAQGKGDR EQQFYLWFDP TKNFHTYSIV WRPQHIIFLV DNLPIRVFNN AEKLGVPFPK SQPMRIYSSL WNADDWATRG
201: GLVKTDWSKA PFTAYYRGFN AAACTASSGC DPKFKSSFGD GKLQVATELN AYGRRRLRWV QKYFMIYNYC SDLKRFPRGF PPECKKSRV
Arabidopsis Description
XTH15Xyloglucan endotransglucosylase/hydrolase protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q38911]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.