Factsheet for Solyc09g092520.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol, extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056316	Potato	extracellular	98.91	98.91
Solyc12g098610.1.1	Tomato	nucleus	80.07	84.67
VIT_05s0062g00610.t01	Wine grape	cytosol	75.0	78.11
VIT_05s0062g00480.t01	Wine grape	cytosol	74.64	77.74
KRH31558	Soybean	nucleus	76.45	76.45
KRG97361	Soybean	nucleus	76.81	75.99
VIT_05s0062g00240.t01	Wine grape	extracellular	77.17	75.8
KRH58823	Soybean	extracellular, nucleus	77.17	75.27
VIT_05s0062g00250.t01	Wine grape	extracellular	75.36	74.55
KRH42721	Soybean	extracellular, nucleus	76.09	74.2
CDY61576	Canola	vacuole	71.74	70.71
Bra038442.1-P	Field mustard	extracellular	73.91	70.59
CDY27126	Canola	extracellular	73.55	70.24
AT4G14130.1	Thale cress	extracellular	72.1	68.86
Bra014975.1-P	Field mustard	extracellular, vacuole	72.46	68.73
AT3G23730.1	Thale cress	extracellular, vacuole	71.74	68.04
Solyc03g093080.2.1	Tomato	extracellular	67.75	65.38
Solyc03g093120.2.1	Tomato	extracellular	67.03	64.69
Solyc03g093130.2.1	Tomato	extracellular	67.03	64.46
Solyc03g093110.2.1	Tomato	extracellular	66.3	63.76
Solyc07g009380.2.1	Tomato	extracellular, nucleus	63.41	63.64
Solyc07g006860.2.1	Tomato	extracellular	65.22	63.16
CDY12366	Canola	extracellular	63.77	61.97
Solyc05g046290.2.1	Tomato	extracellular	63.77	61.11
Solyc07g056000.2.1	Tomato	extracellular, nucleus	63.41	60.98
Solyc12g017240.1.1	Tomato	extracellular	63.77	60.9
Solyc07g006870.2.1	Tomato	extracellular, vacuole	61.59	60.28
Solyc07g055990.2.1	Tomato	nucleus	59.78	56.9
Solyc12g011030.1.1	Tomato	nucleus	54.71	54.51
Solyc12g007270.1.1	Tomato	extracellular	52.17	49.15
Solyc11g040140.1.1	Tomato	extracellular	51.81	47.67
Solyc12g007260.1.1	Tomato	extracellular	50.36	47.6
Solyc11g065600.1.1	Tomato	nucleus	49.64	46.76
Solyc01g099630.2.1	Tomato	extracellular	50.0	46.62
Solyc12g007250.1.1	Tomato	extracellular	48.91	46.39
Solyc07g006850.1.1	Tomato	golgi	56.52	45.61
Solyc02g091920.2.1	Tomato	nucleus	47.83	44.75
Solyc07g052980.2.1	Tomato	extracellular	47.46	44.26
Solyc03g098430.2.1	Tomato	extracellular	44.93	43.82
Solyc03g031800.2.1	Tomato	extracellular	44.2	41.36
Solyc10g005350.2.1	Tomato	extracellular	42.03	40.28
Solyc01g106650.2.1	Tomato	extracellular, vacuole	42.39	39.93
Solyc02g080160.2.1	Tomato	extracellular	42.39	39.26

Protein Annotations

Gene3D:2.60.120.200	MapMan:50.2.4	InterPro:ConA-like_dom_sf	InterPro:GH16	InterPro:GH16_AS	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623
GO:GO:0005975	GO:GO:0006073	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010411
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016740	GO:GO:0016762	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0042546	GO:GO:0048046	GO:GO:0071555	InterPro:IPR000757
UniProt:K4CWS8	PFAM:PF00722	PFAM:PF06955	PIRSF:PIRSF005604	ScanProsite:PS01034	PFscan:PS51762
PANTHER:PTHR31062	PANTHER:PTHR31062:SF62	SUPFAM:SSF49899	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc09g092520.2	EnsemblPlants:Solyc09g092520.2.1
TMHMM:TMhelix	UniParc:UPI000276BD73	InterPro:XET_C	InterPro:XTH	:	:

Description

Xyloglucan endotransglucosylase/hydrolase [Source:UniProtKB/TrEMBL;Acc:K4CWS8]

Coordinates

chr9:-:71577901..71579975

Molecular Weight (calculated)

32024.9 Da

IEP (calculated)

9.289

GRAVY (calculated)

-0.481

Length

276 amino acids

Sequence
(BLAST)

001: MGSFTHYGFL MLALLFSSCM VTYGGNFYQE FDFTWGGNRA KIFNGGQLLS LSLDKVSGSG FQSKKEHLFG RIDMQIKLVA GNSAGTVTTY YLSSQGPTHD
101: EIDFEFLGNV TGEPYILHTN IYAQGKGNKE QQFYLWFDPT KNFHTYSIIW KPQHIIFLVD NTPIRVYKNA ESVGVPFPKN QPMRIYSSLW NADDWATRGG
201: LVKTDWAQAP FTAYYRNYMA QSFSPSQFSD QKWQNQELDS NGRRRLRWVQ KNFMIYNYCT DIKRFPQGFP PECRRF

Best Arabidopsis Sequence Match ( AT3G23730.1 )
(BLAST)

001: MGRILNRTVL MTLLVVTMAG TAFSGSFNEE FDLTWGEHRG KIFSGGKMLS LSLDRVSGSG FKSKKEYLFG RIDMQLKLVA GNSAGTVTAY YLSSEGPTHD
101: EIDFEFLGNE TGKPYVLHTN VFAQGKGNRE QQFYLWFDPT KNFHTYSLVW RPQHIIFMVD NVPIRVFNNA EQLGVPFPKN QPMKIYSSLW NADDWATRGG
201: LVKTDWSKAP FTAYYRGFNA AACTVSSGSS FCDPKFKSSF TNGESQVANE LNAYGRRRLR WVQKYFMIYD YCSDLKRFPQ GFPPECRKSR V

Arabidopsis Description

XTH16Probable xyloglucan endotransglucosylase/hydrolase protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LG58]
SUBAcon: [extracellular,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.